Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 131 4e-25
>seq1473
Length=2736273
Score = 131 bits (144), Expect = 4e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || ||||| | || |||||| ||||| || || || | |
Sbjct 1455196 CCACCTCGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAG 1455137
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || |||||||||||||| || || || |||| | ||||||| | ||
Sbjct 1455136 AGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGA 1455077
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| || ||||||||||| |||||||| || || | | || || || ||
Sbjct 1455076 ATTCCTTCCTTGTCCTGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACC 1455017
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| || || || ||||| || || ||||||||
Sbjct 1455016 TCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTGCAT 1454970
Score = 129 bits (142), Expect = 1e-24
Identities = 169/233 (73%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| || || | || || ||||| | ||| || |||||||| || |||||
Sbjct 2588187 TGGCCACCACGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCT 2588128
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || ||||| || ||||||| ||| || || || ||||||| | ||| || |||
Sbjct 2588127 GACAGTGTGCGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGG---TCT 2588071
Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
||| || ||||| || ||||||||||| ||||| || || || || | || || | |
Sbjct 2588070 GGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGT 2588011
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| ||||| || || || ||||| ||||| ||||||||
Sbjct 2588010 TCAACCTCAAGGGTGATTGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 2587958
Score = 127 bits (140), Expect = 5e-24
Identities = 168/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | || || ||||||| || ||||||||||| || ||||
Sbjct 1454288 CATG-CCACCTCGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGT 1454230
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | | |||||||| ||||||||||| || || || ||||||| | ||| ||| |
Sbjct 1454229 CAGATAAGGTGCGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAG 1454170
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| || ||||| || ||||||||||| || ||||| || || | || || || |
Sbjct 1454169 GGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCT 1454110
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| ||||| || || || ||||| || || ||||||||
Sbjct 1454109 CGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 1454058
Score = 125 bits (138), Expect = 2e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||| | || || ||||| | ||| || || ||||| || ||||| | |
Sbjct 2590175 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2590234
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| |||||||| | || || || || ||||||| | ||| || | |||
Sbjct 2590235 AGAGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGA 2590294
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| || ||||||||||| ||||| || || || |||| || || | || ||
Sbjct 2590295 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACC 2590354
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| || || || ||||| || || ||||||||
Sbjct 2590355 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 2590401
Score = 122 bits (134), Expect = 2e-22
Identities = 167/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | || || ||||| | ||| ||| || ||||| || ||||
Sbjct 1454060 CATG-CCACCTCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGT 1454002
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | ||| ||||| || ||||| | |||||| || || || |||| | |||||| |
Sbjct 1454001 CAGAGAGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAG 1453942
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| || ||||| || ||||||||||| || ||||| || || | || || || |
Sbjct 1453941 GAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCT 1453882
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| ||||| || ||||| ||||| || || || || || || |||||||||||
Sbjct 1453881 CAACTTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830
Score = 120 bits (132), Expect = 7e-22
Identities = 169/235 (72%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | ||| | || || ||||| | ||| || || ||||| || ||||
Sbjct 2587732 CATG-CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGT 2587674
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | ||||||||| || ||||| | || || || || || |||| | ||| || |
Sbjct 2587673 CTGAGAGCGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGG---T 2587617
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| || ||||| || ||||||||||| ||||| || || || |||| || || |
Sbjct 2587616 CTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGG 2587557
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| ||||| || || || ||||| || || ||||||||
Sbjct 2587556 GCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 2587502
Score = 118 bits (130), Expect = 2e-21
Identities = 166/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | || |||||||||| ||| || |||||||| || || |
Sbjct 1454972 CATG-CCACCTCGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAAT 1454914
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | ||| || || || ||||||| || ||||| || |||||||| | ||||| |
Sbjct 1454913 CAGAGAGGGTACGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAG 1454854
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| || ||||| || ||||||||||| || || || || || | | ||| | | ||
Sbjct 1454853 GGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTT 1454794
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| ||||| || || || ||||| || || | ||||||
Sbjct 1454793 CAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAACAACTGCAT 1454742
Score = 116 bits (128), Expect = 9e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| | || | || || ||||| | ||| ||||| ||||| || ||||| |
Sbjct 1452461 TCCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 1452402
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
||| ||||| || ||||| || ||||| || || ||||||| | || ||| | ||
Sbjct 1452401 GAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGG 1452342
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| ||||| || ||||||||||| ||||| || || || | || || || ||| ||
Sbjct 1452341 AATACCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAAC 1452282
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || ||||| ||||| || || || ||||| || || || ||||||
Sbjct 1452281 CTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATT 1452233
Score = 111 bits (122), Expect = 4e-19
Identities = 167/235 (71%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | ||| | || || ||||| | || || || ||||| || ||||
Sbjct 2587960 CATG-CCACCCCTGAGACGCAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGT 2587902
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || || || || ||||||| ||| || || || ||||||| | ||| || |
Sbjct 2587901 CTGATAGTGTACGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGG---T 2587845
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| || ||||| || ||||||||||| ||||| || || || || | || || |
Sbjct 2587844 CTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGG 2587785
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||| || || || || || ||||| || || || ||||| ||||| ||||||||
Sbjct 2587784 GTTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 2587730
Score = 109 bits (120), Expect = 1e-18
Identities = 164/232 (71%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | | || ||||| | ||| || || || || || ||||
Sbjct 1453376 CATG-CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGT 1453318
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| ||| ||||| || ||||| | |||||| || || || |||| | |||||| |
Sbjct 1453317 CGGAGAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAG 1453258
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| || |||||||| ||||||||||| || ||||| || || | | || ||| |
Sbjct 1453257 GAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCT 1453198
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || |||| ||||| || || || ||||| || || ||||||||
Sbjct 1453197 CAACCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1453146
Score = 104 bits (114), Expect = 6e-17
Identities = 163/232 (70%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | | || ||||| | ||| || || ||||| || ||||
Sbjct 1453148 CATG-CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGT 1453090
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | ||| | ||| || ||||| | |||||| || || || |||| | |||||| |
Sbjct 1453089 CAGAGAGGGAGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAG 1453030
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| || |||||||| ||||||||||| || ||||| || || | | || ||| |
Sbjct 1453029 GAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCT 1452970
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || |||| ||||| || || || ||||| || || ||||||||
Sbjct 1452969 CAACCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179089471986606
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