Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1148 203 4e-47 seq10769 87.8 2e-12 >seq1148 Length=2189075 Score = 203 bits (224), Expect = 4e-47 Identities = 838/1303 (64%), Gaps = 38/1303 (3%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 || || ||| | ||||| | ||||| | |||| ||||| || | ||| || || |||||| Sbjct 533127 TATATGTTGCTGGTGTACGCCTCAATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAG 533186 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || ||||||||||| |||| || |||||||| | | ||| | | || ||| Sbjct 533187 GCGGTGGGCATGGGCGCCAGCAGCAGGCTGTTTCTCACACCGTGCTTGGCGATCTTCTCC 533246 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 114121 ||||| |||||| | || | | || ||||||||| ||| |||||||| Sbjct 533247 TTGAGTAATGTCCAGTCCCACAGCGGCGTGGGAATCCGCTGCCACATGTCATACTGGAGG 533306 Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 || || | | | | || || ||| | |||||||| ||||| | | | |||| Sbjct 533307 ATCCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGC 533366 Query 114182 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 ||| |||| ||||| || || |||| || | ||||| || || || ||| | | Sbjct 533367 TCGCAGCTGGCCTCCAGCGCGGCGTAGTAGAGAGTCTCGAAGATCTGAATATTGAGTAGT 533426 Query 114242 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 114301 | |||||| | ||||| | | || | ||| || | || || || || ||| Sbjct 533427 TGCGCCTCGGGGCTCTCAAAGGGCTGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGG 533486 Query 114302 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGA 114358 || |||| |||||| || || || | ||| || || | || ||| ||| || Sbjct 533487 ACGCCGATGCCAATGGGCCGGTGGCGCATGTTGGAGCGCTGCGC---CTCAGGCACCGGG 533543 Query 114359 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 114418 || | || | ||||| | ||| || || || ||| || || || |||| | Sbjct 533544 TAGTAGTTGATGTCGATGATCCTGTTGAGGTTCTTGACGATGACTTTGGTGACGGCCGCC 533603 Query 114419 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 114478 ||||| | | | || | |||| ||| |||| ||| | || || | || Sbjct 533604 AGCTTCTTGAAGTCGTATGTGCG---CTCGGGGGTGACGTACATGTTGAGCGCCACGGAG 533660 Query 114479 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 114538 || || || ||||| | ||| |||| ||||| || | || ||||| |||| Sbjct 533661 GCTAGGTTGCACACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAGG 533720 Query 114539 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 114598 || | ||| |||||||||| ||||| || || ||| || || ||||||||| Sbjct 533721 TTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCCTTG 533780 Query 114599 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCG 114658 || |||||||| ||||| |||||||| || || |||| || || || | ||| || | Sbjct 533781 TAGAGCATGTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACACCTGC 533840 Query 114659 GCGGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTC 114717 |||| || || || ||| | || ||||||| ||| || |||||| | || || Sbjct 533841 TGGGCTTTCACCACCCGC-TTGACCCGGCCCTCCTTCTCATAGCGTGTGTACAAAGCCTC 533899 Query 114718 AAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCA 114777 |||||| |||||| | ||| || || || || || ||| || | ||| ||||| Sbjct 533900 AAACTCATCACCCCAGCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCGACCA 533959 Query 114778 TTGACCACCCT--CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAG 114835 | || | ||| || | ||||||||| || ||||||||||||||| | |||| Sbjct 533960 --GTCCTGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAAC 534017 Query 114836 AGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 114894 || || || ||| ||| || | || || || || ||||| ||||| | Sbjct 534018 AGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTG-TTCTTCTTCAGCTCCAGGAAGTCGAA 534076 Query 114895 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGA------TTGACCCCTTACGACGACC 114948 ||| || ||||||||| |||||||||| |||| | || ||| | | || Sbjct 534077 GATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTT--GTTG-CC 534133 Query 114949 AGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATC 115008 |||||| || || | ||| ||| || | || || ||||| || | | || | Sbjct 534134 TCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTT 534193 Query 115009 AGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGA--CATCATGGATGT 115064 || | |||||| || || ||| || | | | ||| | || || | || Sbjct 534194 GGAGTTGCCATTGGTGCCGGCGATGTAGCTGCC--AGTGGAACGGATGCAGC--TGACCG 534249 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 || || || || |||||| | || ||||| | || |||| | |||| || |||||| Sbjct 534250 CCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGA 534309 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCC--T 115182 | || ||||| ||| |||| | || | ||||||||||| |||| ||||||| | Sbjct 534310 TGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGT 534369 Query 115183 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 ||||| ||||||||||| || || |||| ||||| ||||| Sbjct 534370 TGGTG--CCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAAC 534410 >seq10769 Length=223 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 10/216 (5%) Strand=Plus/Minus Query 126086 TCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAA 126145 || || || ||| || ||| ||||| | || || || |||||||||||||| | |||| Sbjct 208 TCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAACCAGAAAATAGAACAA 149 Query 126146 AATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || | || || ||||| || ||||||||| || || |||| || || |||||||| Sbjct 148 AAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATCAGGCGTTCAGCAAA- 90 Query 126206 GAGCGCGACTTTGTG--TCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACG 126263 |||| ||| || | |||||| | ||||| | ||||| |||| |||| || Sbjct 89 -------ACTTGGTGATTCTATCCACTTTAAGGCCCAATCTGCCTTCTTCTTGATAGCCG 37 Query 126264 GGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTT 126299 | | | | || || | ||||||| ||||||| Sbjct 36 GAAAATTTTCAATGGCCTTAAAGAGTATATTCTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597074508931160