Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1473 129 6e-25 >seq1473 Length=2736273 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || || || ||||||||||| || | || |||||| | ||||| Sbjct 1453354 ACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 1453295 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || ||||| ||| | || | || ||| ||||| |||||||| |||||||| || || Sbjct 1453294 AGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGG 1453235 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||| ||| ||| ||||| |||| | || || || | ||| ||||||||| Sbjct 1453234 ATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACGGTCTTG 1453175 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || ||||| || || ||||| Sbjct 1453174 CCAGTTAGGGTCTTTACAAAGATCTGCAT 1453146 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||| | || ||||| ||||||||||| | || ||| || | ||| Sbjct 1454953 AGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCAGAGAGGGTACGGCCATCT 1454894 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || |||| || ||||| || ||||| ||||| || || Sbjct 1454893 TCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGGGGAATACCTTCCTTGTCC 1454834 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| ||||||||| ||| || || || | || | |||| Sbjct 1454833 TGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCAACCTCAAGGGTGATGGTC 1454774 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || || || | ||||| Sbjct 1454773 TTGCCAGTGAGGGTCTTCACAAACAACTGCAT 1454742 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || || || || |||||||| || | || || ||| | ||||| Sbjct 1453126 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGAGCGGCCATCTTCC 1453067 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || ||||| ||| | || | || ||| ||||| |||||||| |||||||| || || Sbjct 1453066 AGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGG 1453007 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||| ||| ||| ||||| |||| | || || || | ||| ||||||||| Sbjct 1453006 ATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACGGTCTTG 1452947 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || ||||| || || ||||| Sbjct 1452946 CCAGTTAGGGTCTTTACAAAGATCTGCAT 1452918 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || ||||| || |||||||| || | || |||||| | ||| Sbjct 1452445 AGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 1452386 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||| ||||| ||| | || | || ||||| || |||||||| ||||| || || Sbjct 1452385 TCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCCTTGTCC 1452326 Query 64352 TGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| |||||| || ||| || || |||| | | || || || | || | ||| Sbjct 1452325 TGGATTTTG-GCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTGATGGT 1452267 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || | || || || || ||||||||||| Sbjct 1452266 CTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTT 1452231 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||| || ||||||||||| | || ||||| | ||| Sbjct 1455181 AGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGTGCGGCCATCT 1455122 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || ||||| ||| | || | || ||| || || || ||||||||||| || || Sbjct 1455121 TCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCCTTCCTTGTCC 1455062 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| ||| || || |||| | | || || || | ||| | ||| Sbjct 1455061 TGGA-TTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACCTCAAGAGTGATGGT 1455003 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | || || || ||||| ||||| Sbjct 1455002 CTTACCAGTAAGGGTCTTCACAAAAATCTGCAT 1454970 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||||||||||| | || ||| | | ||||| || |||||||| Sbjct 1454482 GTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTTTGGTCATCTTCCAGTGGCTTGCCG 1454423 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||||||||| || ||||| ||||| || ||||| |||| ||| Sbjct 1454422 GCAAATATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATTTGGGCCTTG 1454363 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| || || |||| | || || || | || |||| ||||||||| | || Sbjct 1454362 ACATTCTCAACAGTGTCACTAGTCTCGACCTCAAGGGTGACGGGCTTGCCGGTAAGGGTC 1454303 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 1454302 TTCACAAATATCTGCAT 1454286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499411359703880