Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 129 6e-25
>seq1473
Length=2736273
Score = 129 bits (142), Expect = 6e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294
|| ||||| | || || || || ||||||||||| || | || |||||| | |||||
Sbjct 1453354 ACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 1453295
Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354
|| || ||||| ||| | || | || ||| ||||| |||||||| |||||||| || ||
Sbjct 1453294 AGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGG 1453235
Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414
||||| ||| ||| ||| ||||| |||| | || || || | ||| |||||||||
Sbjct 1453234 ATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACGGTCTTG 1453175
Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || | || ||||| || || |||||
Sbjct 1453174 CCAGTTAGGGTCTTTACAAAGATCTGCAT 1453146
Score = 122 bits (134), Expect = 9e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| ||| | || ||||| ||||||||||| | || ||| || | |||
Sbjct 1454953 AGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCAGAGAGGGTACGGCCATCT 1454894
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||| || ||| | || |||| || ||||| || ||||| ||||| || ||
Sbjct 1454893 TCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGGGGAATACCTTCCTTGTCC 1454834
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| ||||| ||| ||| ||| ||||||||| ||| || || || | || | ||||
Sbjct 1454833 TGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCAACCTCAAGGGTGATGGTC 1454774
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| || | || || || || | |||||
Sbjct 1454773 TTGCCAGTGAGGGTCTTCACAAACAACTGCAT 1454742
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294
|| ||||| | || || || || || |||||||| || | || || ||| | |||||
Sbjct 1453126 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGAGCGGCCATCTTCC 1453067
Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354
|| || ||||| ||| | || | || ||| ||||| |||||||| |||||||| || ||
Sbjct 1453066 AGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGG 1453007
Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414
||||| ||| ||| ||| ||||| |||| | || || || | ||| |||||||||
Sbjct 1453006 ATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACGGTCTTG 1452947
Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || | || ||||| || || |||||
Sbjct 1452946 CCAGTTAGGGTCTTTACAAAGATCTGCAT 1452918
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || || ||||| || |||||||| || | || |||||| | |||
Sbjct 1452445 AGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 1452386
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | ||| ||||| ||| | || | || ||||| || |||||||| ||||| || ||
Sbjct 1452385 TCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCCTTGTCC 1452326
Query 64352 TGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| ||||| |||||| || ||| || || |||| | | || || || | || | |||
Sbjct 1452325 TGGATTTTG-GCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTGATGGT 1452267
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|||||| || | || || || || |||||||||||
Sbjct 1452266 CTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTT 1452231
Score = 111 bits (122), Expect = 2e-19
Identities = 154/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || |||||||| || ||||||||||| | || ||||| | |||
Sbjct 1455181 AGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGTGCGGCCATCT 1455122
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | || ||||| ||| | || | || ||| || || || ||||||||||| || ||
Sbjct 1455121 TCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCCTTCCTTGTCC 1455062
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | |||| ||||| ||| ||| || || |||| | | || || || | ||| | |||
Sbjct 1455061 TGGA-TTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACCTCAAGAGTGATGGT 1455003
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| || || | || || || ||||| |||||
Sbjct 1455002 CTTACCAGTAAGGGTCTTCACAAAAATCTGCAT 1454970
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || ||||||||||| | || ||| | | ||||| || ||||||||
Sbjct 1454482 GTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTTTGGTCATCTTCCAGTGGCTTGCCG 1454423
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || | || ||||||||| || ||||| ||||| || ||||| |||| |||
Sbjct 1454422 GCAAATATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATTTGGGCCTTG 1454363
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| || || |||| | || || || | || |||| ||||||||| | ||
Sbjct 1454362 ACATTCTCAACAGTGTCACTAGTCTCGACCTCAAGGGTGACGGGCTTGCCGGTAAGGGTC 1454303
Query 64427 TTTACGAAAATTTGCAT 64443
|| || || || |||||
Sbjct 1454302 TTCACAAATATCTGCAT 1454286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499411359703880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |