Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1148 315 7e-81 seq354 87.8 2e-12 >seq1148 Length=2189075 Score = 315 bits (348), Expect = 7e-81 Identities = 999/1533 (65%), Gaps = 53/1533 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| ||| ||||| |||||| || |||||| || || || |||||||| | |||| | Sbjct 534574 TACAATTTCTTTGGCTTCAAGACCCTGGAGCGCTCCTATCTGCTCAAGATCAACGGCAAG 534515 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGC---CAC 93834 || | ||||| ||||| || |||||||||| || || | || || |||||| | | Sbjct 534514 GTGGCAGAGCGCCCGCAGCACATGCTGATGCGGGTGGCGGTGGGCATCCACGGCGCGCGC 534455 Query 93835 GAC-ATGCCGA-------ATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATA 93886 | |||||| | || | ||||||||||| ||| || | Sbjct 534454 GTGGATGCCGCCATTGAGACGTACAACCTGCTTTCAGAGAGATG-----------GTTCA 534406 Query 93887 CCATGGCCACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCACAGATGTCTTCGTG 93944 | ||| | || || || |||||||| || ||| |||| |||||| |||| || Sbjct 534405 CGCACGCCTCACCCACTCTTTTCAACGCTGGCACCAACCGG--CCACAGTTGTCCAGCTG 534348 Query 93945 TTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTG 94004 |||||| | | | |||| |||| |||| || || | ||||| |||||| | || Sbjct 534347 CTTCCTGCTAGCCATGAAGGACGACAGCATCGATGGCATCTACGACACGCTCAAGCAGTG 534288 Query 94005 TGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAG 94064 ||| |||||| |||| || || || ||||| | ||| | | | ||| ||| Sbjct 534287 TGCCCTCATCTCCAAATCGGCAGGTGGCATCGGCGTGGCGGTCAGCTGCATCCGTTCCAC 534228 Query 94065 GGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGT 94124 || ||||||| ||| |||||||||| |||||||||||| || || ||||| || || Sbjct 534227 TGGCAGCTACATCGCCGGCACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTGCGTGT 534168 Query 94125 CTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGC 94184 || ||||||| |||||||||||||||||||||| || | | || || | ||||| Sbjct 534167 CTACAACAACACGGCGCGCTACGTGGACCAGGGAGGCAACAAGCGGCCCGGCGCCTTCGC 534108 Query 94185 GGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCA 94244 | || || ||||| |||||| ||| | | ||| | || ||| |||||| Sbjct 534107 CATGTACCTGGAGCCGTGGCACTTTGACATCTTCGACTTCCTGGAGCTGAAGAAGAACAC 534048 Query 94245 CGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTT 94304 ||||| || | || | ||| | ||||| |||| || ||||||| | ||||| || || Sbjct 534047 AGGCAAAGAGGAGCAGCGCGCCCGTGACCTGTTCTTCGGTCTCTGGATCCCAGATCTGTT 533988 Query 94305 TATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364 ||||| | || |||| ||| | |||| || | ||||| ||||| || || || Sbjct 533987 CATGAAGAGGGTAGAGAGCAACCAGGACTGGTCGCTCATGTGTCCAAATGAGTGCCCTGG 533928 Query 94365 ACTGTCCGACGTTTGTG--GATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAG 94422 ||| ||| || | ||| | | ||||| | ||||| | || || || | || Sbjct 533927 CCTGGACGAGTGCTGGGGTGAT-GAG-TTTGAGGCTTTGTACACACGCTATGAGAAGGAG 533870 Query 94423 GGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAG 94482 ||| || || | ||| || | || | || ||||| | ||| | || ||| Sbjct 533869 GGCCGGGTCAAGCGGGTGGTGAAAGCCCAGCAGGTGTGGTACGCCATCATCGAGTCTCAG 533810 Query 94483 GTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAG 94542 |||||||| ||||| ||||| | | |||||| | ||| |||| ||||||| Sbjct 533809 ACAGAGACGGGCACGCCGTACATGCTCTACAAGGATGCATGCAATCGCAAGAGCAACCAG 533750 Query 94543 CAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCT 94602 ||| |||| || |||||| || || |||||||| ||||| ||||| || || Sbjct 533749 CAGAACCTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGATCGTCGAATACACCAGC 533690 Query 94603 CCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGAT 94662 | ||||||| | || ||||| ||||| | |||| | | || || | || || | Sbjct 533689 CAGGACGAGGTGGCCGTGTGCAACCTAGCCTCCGT--GGCGCTCAACAT--GTACGTCAC 533634 Query 94663 GCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG 94722 || | | || | | ||| | || |||| | | | || | | || Sbjct 533633 CCC-------CGAGCGC-ACATACGACTTCAAGAAGCTGGCGGCCGTCACCAAAGTCATC 533582 Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782 ||| |||||| |||||| | ||||||| |||| |||||| || || |||||| || | Sbjct 533581 GTCAAGAACCTCAACAGGATCATCGACATCAACTACTACCCGGTGCCTGAGGCGCAGCGC 533522 Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 || ||| || || |||||||| ||||||||||||||||| | || ||||| | | Sbjct 533521 TCCAACATGCGCCACCGGCCCATTGGCATCGGCGTCCAGGGGCTGGCCGACGCCTTCATT 533462 Query 94843 ATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAA 94902 | ||||| | ||||| || ||| ||| | ||| | | || ||||| Sbjct 533461 CTCATGCGGCAGCCCTTTGAGAGCCCCGAGGCGCAACTACTCAATATTCAGATCTTCGAG 533402 Query 94903 AGCATTTATTACGGGGC-CATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC 94961 | | || |||| || | || | | | | | | ||||| | || ||| || Sbjct 533401 ACTCTCTACTACGCCGCGCTGGAGGCCAGCTG-CGAGCTGGCC---GCTGAGCACGGCCC 533346 Query 94962 ACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021 |||| ||| || || || || | |||| || | |||| ||| | ||| Sbjct 533345 CTACGAGACGTACCCGGGCTCTCCTGTCAGCAAGGGGATCCTCCAGTATGACATGTGGCA 533286 Query 95022 TGTGAAGCCCTCGGGTCTGTACGACTGGGAA--GCTCTACGCGCTGATGTTATCAAACAC 95079 || ||| || |||| |||||| | ||| | | | || | ||| ||| Sbjct 533285 GCGGATTCCCACGCCGCTGTGGGACTGGACATTACTCAAGGAGAAGA--TCGCCAAGCAC 533228 Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139 ||||||| |||| ||||| |||| ||||||||||| |||||||| |||||||||||| Sbjct 533227 GGTGTGAGAAACAGCCTGCTGCTGGCGCCCATGCCCACCGCCTCCACTGCGCAGATCCTT 533168 Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGC-GGGTGCTCGC 95198 |||||||||||||| | || | | |||| |||| | ||| ||| || |||||||| | Sbjct 533167 GGCAACAACGAGTCCATTGAGGCGTACACCAGCAACATATAC-ACACGCAGGGTGCTCTC 533109 Query 95199 CGGGGAATTCCCCGTCATCAACAAGCACCTCCT 95231 ||| || |||| | ||||| |||||| || Sbjct 533108 CGGCGAGTTCCAGTGCGTCAACCCGCACCTACT 533076 >seq354 Length=3526367 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| || | |||| |||| |||| |||||||||||||||||||| || |||||| Sbjct 777187 CACGGCGTTAGAAACAGTTTGCTCTTGGCGCCCATGCCCACGGCCTCCACTGCTCAGATC 777128 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || || || || ||||| |||| ||| |||| ||| | |||| | | | |||||| Sbjct 777127 CTCGGGAATAATGAGTCTATCGAGGCCTACACCAGCAATATCTACACCCGCAGAGTGCTC 777068 Query 95197 GCCGGGGAATT 95207 | |||||||| Sbjct 777067 TCGGGGGAATT 777057 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 || ||||| || || ||||| ||| ||||||| || ||| | ||| |||||||||| Sbjct 778971 GAAACGGGCACTCCGTACATGCTGTACAAGGACGCTTGCAATGGGAAGAGCAACCAGCAG 778912 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATAC 94598 |||||||| ||||| | ||| ||||||||||||||||||||||||| Sbjct 778911 AACCTCGGGACCATCAAATCCAGCAATTTGTGCACCGAGATTGTCGAGTATAC 778859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494492059136920