Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 315 7e-81
seq354 87.8 2e-12
>seq1148
Length=2189075
Score = 315 bits (348), Expect = 7e-81
Identities = 999/1533 (65%), Gaps = 53/1533 (3%)
Strand=Plus/Minus
Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777
||| ||| ||||| |||||| || |||||| || || || |||||||| | |||| |
Sbjct 534574 TACAATTTCTTTGGCTTCAAGACCCTGGAGCGCTCCTATCTGCTCAAGATCAACGGCAAG 534515
Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGC---CAC 93834
|| | ||||| ||||| || |||||||||| || || | || || |||||| | |
Sbjct 534514 GTGGCAGAGCGCCCGCAGCACATGCTGATGCGGGTGGCGGTGGGCATCCACGGCGCGCGC 534455
Query 93835 GAC-ATGCCGA-------ATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATA 93886
| |||||| | || | ||||||||||| ||| || |
Sbjct 534454 GTGGATGCCGCCATTGAGACGTACAACCTGCTTTCAGAGAGATG-----------GTTCA 534406
Query 93887 CCATGGCCACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCACAGATGTCTTCGTG 93944
| ||| | || || || |||||||| || ||| |||| |||||| |||| ||
Sbjct 534405 CGCACGCCTCACCCACTCTTTTCAACGCTGGCACCAACCGG--CCACAGTTGTCCAGCTG 534348
Query 93945 TTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTG 94004
|||||| | | | |||| |||| |||| || || | ||||| |||||| | ||
Sbjct 534347 CTTCCTGCTAGCCATGAAGGACGACAGCATCGATGGCATCTACGACACGCTCAAGCAGTG 534288
Query 94005 TGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAG 94064
||| |||||| |||| || || || ||||| | ||| | | | ||| |||
Sbjct 534287 TGCCCTCATCTCCAAATCGGCAGGTGGCATCGGCGTGGCGGTCAGCTGCATCCGTTCCAC 534228
Query 94065 GGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGT 94124
|| ||||||| ||| |||||||||| |||||||||||| || || ||||| || ||
Sbjct 534227 TGGCAGCTACATCGCCGGCACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTGCGTGT 534168
Query 94125 CTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGC 94184
|| ||||||| |||||||||||||||||||||| || | | || || | |||||
Sbjct 534167 CTACAACAACACGGCGCGCTACGTGGACCAGGGAGGCAACAAGCGGCCCGGCGCCTTCGC 534108
Query 94185 GGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCA 94244
| || || ||||| |||||| ||| | | ||| | || ||| ||||||
Sbjct 534107 CATGTACCTGGAGCCGTGGCACTTTGACATCTTCGACTTCCTGGAGCTGAAGAAGAACAC 534048
Query 94245 CGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTT 94304
||||| || | || | ||| | ||||| |||| || ||||||| | ||||| || ||
Sbjct 534047 AGGCAAAGAGGAGCAGCGCGCCCGTGACCTGTTCTTCGGTCTCTGGATCCCAGATCTGTT 533988
Query 94305 TATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364
||||| | || |||| ||| | |||| || | ||||| ||||| || || ||
Sbjct 533987 CATGAAGAGGGTAGAGAGCAACCAGGACTGGTCGCTCATGTGTCCAAATGAGTGCCCTGG 533928
Query 94365 ACTGTCCGACGTTTGTG--GATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAG 94422
||| ||| || | ||| | | ||||| | ||||| | || || || | ||
Sbjct 533927 CCTGGACGAGTGCTGGGGTGAT-GAG-TTTGAGGCTTTGTACACACGCTATGAGAAGGAG 533870
Query 94423 GGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAG 94482
||| || || | ||| || | || | || ||||| | ||| | || |||
Sbjct 533869 GGCCGGGTCAAGCGGGTGGTGAAAGCCCAGCAGGTGTGGTACGCCATCATCGAGTCTCAG 533810
Query 94483 GTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAG 94542
|||||||| ||||| ||||| | | |||||| | ||| |||| |||||||
Sbjct 533809 ACAGAGACGGGCACGCCGTACATGCTCTACAAGGATGCATGCAATCGCAAGAGCAACCAG 533750
Query 94543 CAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCT 94602
||| |||| || |||||| || || |||||||| ||||| ||||| || ||
Sbjct 533749 CAGAACCTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGATCGTCGAATACACCAGC 533690
Query 94603 CCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGAT 94662
| ||||||| | || ||||| ||||| | |||| | | || || | || || |
Sbjct 533689 CAGGACGAGGTGGCCGTGTGCAACCTAGCCTCCGT--GGCGCTCAACAT--GTACGTCAC 533634
Query 94663 GCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG 94722
|| | | || | | ||| | || |||| | | | || | | ||
Sbjct 533633 CCC-------CGAGCGC-ACATACGACTTCAAGAAGCTGGCGGCCGTCACCAAAGTCATC 533582
Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782
||| |||||| |||||| | ||||||| |||| |||||| || || |||||| || |
Sbjct 533581 GTCAAGAACCTCAACAGGATCATCGACATCAACTACTACCCGGTGCCTGAGGCGCAGCGC 533522
Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842
|| ||| || || |||||||| ||||||||||||||||| | || ||||| | |
Sbjct 533521 TCCAACATGCGCCACCGGCCCATTGGCATCGGCGTCCAGGGGCTGGCCGACGCCTTCATT 533462
Query 94843 ATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAA 94902
| ||||| | ||||| || ||| ||| | ||| | | || |||||
Sbjct 533461 CTCATGCGGCAGCCCTTTGAGAGCCCCGAGGCGCAACTACTCAATATTCAGATCTTCGAG 533402
Query 94903 AGCATTTATTACGGGGC-CATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC 94961
| | || |||| || | || | | | | | | ||||| | || ||| ||
Sbjct 533401 ACTCTCTACTACGCCGCGCTGGAGGCCAGCTG-CGAGCTGGCC---GCTGAGCACGGCCC 533346
Query 94962 ACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021
|||| ||| || || || || | |||| || | |||| ||| | |||
Sbjct 533345 CTACGAGACGTACCCGGGCTCTCCTGTCAGCAAGGGGATCCTCCAGTATGACATGTGGCA 533286
Query 95022 TGTGAAGCCCTCGGGTCTGTACGACTGGGAA--GCTCTACGCGCTGATGTTATCAAACAC 95079
|| ||| || |||| |||||| | ||| | | | || | ||| |||
Sbjct 533285 GCGGATTCCCACGCCGCTGTGGGACTGGACATTACTCAAGGAGAAGA--TCGCCAAGCAC 533228
Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139
||||||| |||| ||||| |||| ||||||||||| |||||||| ||||||||||||
Sbjct 533227 GGTGTGAGAAACAGCCTGCTGCTGGCGCCCATGCCCACCGCCTCCACTGCGCAGATCCTT 533168
Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGC-GGGTGCTCGC 95198
|||||||||||||| | || | | |||| |||| | ||| ||| || |||||||| |
Sbjct 533167 GGCAACAACGAGTCCATTGAGGCGTACACCAGCAACATATAC-ACACGCAGGGTGCTCTC 533109
Query 95199 CGGGGAATTCCCCGTCATCAACAAGCACCTCCT 95231
||| || |||| | ||||| |||||| ||
Sbjct 533108 CGGCGAGTTCCAGTGCGTCAACCCGCACCTACT 533076
>seq354
Length=3526367
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136
||||| || | |||| |||| |||| |||||||||||||||||||| || ||||||
Sbjct 777187 CACGGCGTTAGAAACAGTTTGCTCTTGGCGCCCATGCCCACGGCCTCCACTGCTCAGATC 777128
Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196
|| || || || ||||| |||| ||| |||| ||| | |||| | | | ||||||
Sbjct 777127 CTCGGGAATAATGAGTCTATCGAGGCCTACACCAGCAATATCTACACCCGCAGAGTGCTC 777068
Query 95197 GCCGGGGAATT 95207
| ||||||||
Sbjct 777067 TCGGGGGAATT 777057
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545
|| ||||| || || ||||| ||| ||||||| || ||| | ||| ||||||||||
Sbjct 778971 GAAACGGGCACTCCGTACATGCTGTACAAGGACGCTTGCAATGGGAAGAGCAACCAGCAG 778912
Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATAC 94598
|||||||| ||||| | ||| |||||||||||||||||||||||||
Sbjct 778911 AACCTCGGGACCATCAAATCCAGCAATTTGTGCACCGAGATTGTCGAGTATAC 778859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494492059136920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |