Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 131 1e-25
>seq1473
Length=2736273
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|||||||||| | | || | ||| ||||| || ||||| || ||||||||||| |
Sbjct 1455196 CCACCTCGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAG 1455137
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | |||||||||||||||||||| ||||||| | |||||| || |||
Sbjct 1455136 AGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGA 1455077
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|||||||||||||| |||||| ||| ||| | || | || || || | || ||
Sbjct 1455076 ATTCCTTCCTTGTCCTGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACC 1455017
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | || ||||| ||||| || || || || |||||||| |||||
Sbjct 1455016 TCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTGCAT 1454970
Score = 129 bits (142), Expect = 4e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
|||||||||||| | || || | ||| ||||| || || || || |||||||| ||
Sbjct 1453602 TGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 1453543
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| | | | ||||| | |||||||||||| ||||||| | ||||||||| |
Sbjct 1453542 AGAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAG 1453483
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||| ||||| ||||||| || ||| |||| | ||| || || | || |
Sbjct 1453482 GAATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAA 1453423
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| |||| ||| || ||||| || || || || || ||||| ||||||||
Sbjct 1453422 CCTCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 1453374
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
|||||||||||| | | || | ||| ||||| || ||||| || |||||||| ||
Sbjct 1452918 TGCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 1452859
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| | | | ||||| | |||||||||||| ||||||| | ||| ||||| |
Sbjct 1452858 AGAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAG 1452799
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||| ||||| |||||| || ||| |||| | ||| || || | || |
Sbjct 1452798 GAATGCCTTCTTTGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAA 1452739
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | ||| |||||||| || || || || || ||||| || |||||
Sbjct 1452738 CCTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 1452690
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
|||||||||||| | | || | ||| ||||| || || || || |||||||| ||
Sbjct 1454058 TGCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 1453999
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|||| | | | ||||| | |||||||||||| ||||||| | ||||||||| |
Sbjct 1453998 AGAGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAG 1453939
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||||||||| |||||| || ||| | || | ||| || || || |
Sbjct 1453938 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAA 1453879
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | ||| ||||| || || || || ||||| ||||| || |||||
Sbjct 1453878 CTTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
|||||||||||| | || || | ||| ||||| || || || || |||||||| ||
Sbjct 1452690 TGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 1452631
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| | | | ||||| ||||||||||||||| ||||||| | ||||||||| ||
Sbjct 1452630 AGAGGGTGCGGCCATCTTCCAATTGTTTGCCAGCGAATATCAACCTCTGTTGGTCAGGTG 1452571
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| |||||||||| |||||| || | | | || | |||||| || || |
Sbjct 1452570 GAATGCCTTCCTTGTACTGGATTTTGGCCTTCATATTCTCAACAGTATCACTCCCCTCAA 1452511
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | || | || || || || || || |||||||| || |||||
Sbjct 1452510 CCTCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452462
Score = 105 bits (116), Expect = 5e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-G 15006
|||||||||||| | | || | |||||||||||| |||||||| |||||||| || |
Sbjct 1454286 TGCCACCTCGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAG 1454227
Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066
| || || | ||||||||||| || ||||| | ||||| | ||| || ||
Sbjct 1454226 ATAAGGTGCGTC-CATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGG 1454168
Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126
||||| ||||||||||| ||||| || ||| | || | ||| || || ||
Sbjct 1454167 GGAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTCG 1454108
Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || | ||| ||||| || || || || || |||||||| || |||||
Sbjct 1454107 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 1454058
Score = 104 bits (114), Expect = 2e-17
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| || | | || | ||| ||||| || ||||| || |||||||| || |
Sbjct 1452460 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 1452401
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||| || ||||||||||| | ||||| | || || || |||
Sbjct 1452400 AGGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGA 1452341
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||||||||| |||||| ||| ||| | || | ||| || || ||| ||
Sbjct 1452340 ATACCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACC 1452281
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181
|| | ||| ||||| || || || || || || ||||| |||||||| ||||
Sbjct 1452280 TCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTTTG 1452229
Score = 102 bits (112), Expect = 6e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
|||||||||||| | || || | ||| ||||| || || || || |||||||| |||
Sbjct 1453374 TGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 1453315
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| | | | ||||| | |||||||||||| ||||||| | ||||||||| |
Sbjct 1453314 AGAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAG 1453255
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||| ||||| |||||| || ||| | || | || || || || |
Sbjct 1453254 GAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAA 1453195
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | || | ||| || || || || || |||||||| || |||||
Sbjct 1453194 CCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1453146
Score = 100 bits (110), Expect = 2e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| ||||| || || || || |||||||| || |||| | | ||||||| | ||
Sbjct 2590198 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCTTCCAGCTG 2590257
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|| ||||| | ||||| | ||| ||||| |||||| ||||||||||| |||||
Sbjct 2590258 CTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATTTT 2590317
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
| ||| ||| | || ||||| || || || || || | ||| ||||| || || ||
Sbjct 2590318 GGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 2590377
Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180
|| || || ||||| || ||||| |||
Sbjct 2590378 GAGGGTCTTCACAAAGATCTGCATGTTT 2590405
Score = 98.7 bits (108), Expect = 7e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
|||||||||||| | | || | ||| ||||| || || || || |||||||| ||
Sbjct 1453830 TGCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 1453771
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| | | | ||||| | |||||||||||| ||||||| | ||||||||| |
Sbjct 1453770 AGAGGGTCCGTCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAG 1453711
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||| ||||| ||||||| || || | || | |||||| || || |
Sbjct 1453710 GAATGCCTTCTTTGTCCTGAATTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAA 1453651
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | || | || || || || || || || ||||| ||||||||
Sbjct 1453650 CCTCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTCACAAATATTTGCAT 1453602
Score = 95.1 bits (104), Expect = 9e-15
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008
|||||| |||| | | || | ||| ||||| || || ||||| |||||||| || |
Sbjct 2588185 GCCACCACGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTC--T 2588128
Query 15009 GAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066
|| | | || | ||||||| ||| |||||||| | ||||| | ||| |||||
Sbjct 2588127 GACAGTGTGCGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGG 2588068
Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126
||||| ||||||||||| |||||| ||| ||| | || || || || || |||
Sbjct 2588067 GGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCA 2588008
Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || | ||| || || || || || || || || || || || |||||
Sbjct 2588007 ACCTCAAGGGTGATTGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 2587958
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
|||||||||||| | || || | ||| ||||| || || || || |||||||| ||
Sbjct 1453146 TGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 1453087
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| | | ||||| | |||||||||||| ||||||| | ||||||||| |
Sbjct 1453086 AGAGGGAGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAG 1453027
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||| ||||| |||||| || ||| | || | || || || || |
Sbjct 1453026 GAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAA 1452967
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | || | ||| || || || || || |||||||| || |||||
Sbjct 1452966 CCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452918
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| ||||| || || || || |||||||| || ||| | | | ||||| | ||
Sbjct 2587705 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATCTTCCAGCTG 2587646
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|| ||||| | ||||| | ||| ||||| ||||| ||||||||||| |||||
Sbjct 2587645 CTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTT 2587586
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
| ||| ||| | || ||||| || || || || || | ||| ||||| || || ||
Sbjct 2587585 GGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 2587526
Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180
|| || || ||||| || ||||| |||
Sbjct 2587525 GAGGGTCTTCACAAAGATCTGCATGTTT 2587498
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030
||| || || || || || || |||||||| || ||| | | || | ||||||| |
Sbjct 2587933 ATGGAGAGTTGACTCCTTCTGGATGTTGTAGTC--TGATAGTGTACGGCCATCTTCTAGT 2587876
Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090
|| |||||||| | ||||| | ||| ||||| ||||| ||||||||||| |||
Sbjct 2587875 TGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATT 2587816
Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150
||| ||| ||| | || || || || || ||| || || | ||| ||||| || ||
Sbjct 2587815 TTGGCTTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCAAGGGTTATGGTCTTGCCA 2587756
Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || || || |||||
Sbjct 2587755 GTGAGGGTCTTCACGAAGATCTGCAT 2587730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357229196440445
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