Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1148 176 4e-39 seq1473 123 2e-23 seq1486 95.1 1e-14 >seq1148 Length=2189075 Score = 176 bits (194), Expect = 4e-39 Identities = 991/1538 (64%), Gaps = 73/1538 (5%) Strand=Plus/Plus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGC-GCCTCAGATACACGTTGCTGGTGAAC 146121 ||||||| ||| |||||||||| ||| || | || | | || | |||||||||| || Sbjct 533086 GGTTGACGCACTGGAACTCGCCGGAGAGCACCCTGCGTGTG-TATATGTTGCTGGTGTAC 533144 Query 146122 GGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCC 146181 | ||| | ||||||||||| || || |||||||| || | ||||| |||||| |||| Sbjct 533145 GCCTCAATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATGGGCGCC 533204 Query 146182 ACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTTTTCCCGTAGTTTGGACCAATT 146240 | ||||| ||||||||| ||||| ||| | ||||| ||| ||| | ||| | Sbjct 533205 AGCAGCAGGCTGTTTCTCACACCGTG-CTTGGCGATCTTCTCCTTGAGTAATGTCCAGTC 533263 Query 146241 CCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCC---GCGGAA 146297 ||||| | ||||||| | | |||| || || | | || || | | Sbjct 533264 CCACA---GCGGCGTGGGAATCCGCTGCCACATGTCATACTGGAGGATCCCCTTGCTG-A 533319 Query 146298 CAGG-GGGCTATTCTCGTACGATTCATAAGGACCGTCGATC-TTGGCCAGTTCGCAGCTA 146355 |||| | || | ||||| || || || |||| | || |||||| |||||||| Sbjct 533320 CAGGAGAGC---CCGGGTACGTCTCGTAGGGGCCGT-GCTCAGCGGCCAGCTCGCAGCTG 533375 Query 146356 GCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA-GTTGACGCTCCTG-GCCT 146413 || ||||| || | |||| | ||||| |||| || | |||| | || |||| Sbjct 533376 GCCTCCAGCGCGGCGTAGTAGAGAGTCTCGAAGATC-TGAATATTGA-GTAGTTGCGCCT 533433 Query 146414 CCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCG 146472 | ||| || | ||| | || | || | ||||||||||| || ||||| | ||| Sbjct 533434 CGGGGCTCTC-AAAGGGCTGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCG 533492 Query 146473 ACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCC---CGCAGTGGGATAGTGG 146529 | |||| ||| ||||| | |||| | ||| ||||| ||| ||| |||| | Sbjct 533493 ATGCCAATGGGCCGGTGGCGCATGTT--GGAGCGCTGCGCCTCAGGCACCGGG-TAGTAG 533549 Query 146530 TTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGG 146589 ||| ||||||||||| ||||||| || |||| | ||| || | |||| Sbjct 533550 TTGATGTCGATGATCCTGTTGAGGTTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTC 533609 Query 146590 ACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAG 146649 |||| ||| | | | ||||| || |||||| || | ||||| | | Sbjct 533610 TTGAAGTCGTATG---TGCGCTCGGGGGTGACGTACATGTTGAGCGCCACGGAGGCTAGG 533666 Query 146650 TTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTG 146709 || || ||||| |||||||| | | || | || ||||| | ||| ||||||||| Sbjct 533667 TTGCACACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTG 533726 Query 146710 CACTTGATGATGCCCAAAtttttttGGTTACTAAACTTG---TTGCAGGGGTCCTTGTAG 146766 ||||||||| |||||| || | ||||| || |||| ||||| | ||||||||| Sbjct 533727 CACTTGATGGTGCCCAGGTTCTGCTGGTTGCT---CTTGCGATTGCATGCATCCTTGTAG 533783 Query 146767 AGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATCT-CT 146825 ||||||||||| || || || | | ||||| |||| | | || | || || Sbjct 533784 AGCATGTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATG--GCGTACCACACCTGCT 533841 Query 146826 GGCCTTT-ACTTGTCTTTCGTACAGTTTATTCTTTTCGTATTTCTCGTACAATATTTCAA 146884 || |||| || | | | | | | ||| || || |||||| |||| Sbjct 533842 GGGCTTTCACCACCCGCTTGACCCGGCCCTCCTTCTCATAGCGTGTGTACAAAGCCTCAA 533901 Query 146885 AACTAGAACC---GTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACC 146941 | | ||| | ||||||| ||||| || ||| || ||||| | ||||||| Sbjct 533902 ACTCATCACCCCAGCACTCGTC---CAGGCCAGGGCACTCATTTGGACACATGAGCGACC 533958 Query 146942 ATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCA 147001 | || | || || || | | ||| |||| ||| || ||||| || || | | || Sbjct 533959 AGTCCTGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAACA 534018 Query 147002 AGTCGCGAGC-CTTGGCGTCCTCGGAGCCCATGTTGCGTC-TCAAGTTGAGGACATCGTA 147059 ||| || || | || ||||| ||| |||| | || ||| | |||| ||| | Sbjct 534019 GGTCACGGGCGCGCTGC-TCCTCTTTGCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAA 534076 Query 147060 AATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCC 147116 || || ||||| ||||||| ||| ||||| ||||| ||| || || || Sbjct 534077 GATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCTCC 534136 Query 147117 CTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGA 147176 ||| || |||| |||| || |||| ||| |||| || | ||||| ||| |||||| ||| Sbjct 534137 CTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTGGA 534196 Query 147177 TTT---TGTGGTGC---CGTTGTA-TTG--AGCG---CTGACGC-TTTGCACGCTCAGCC 147223 || |||||| || |||| || || | | || || || ||| || | Sbjct 534197 GTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGGAACGGATGCAGCTGACCGC-CACGC 534255 Query 147224 CGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGT 147283 ||| || || || || || || | || ||| | | || | ||||||||| | Sbjct 534256 CGATGCCACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGATGCCAT 534315 Query 147284 CGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGC 147343 |||||||||| ||||| ||| | ||||||| || ||| || || || |||| Sbjct 534316 CGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTTGGTGC 534375 Query 147344 CCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCAGACTCATCAATTGATACG 147403 | || || || ||||| ||||||||||||| | | | || | |||| Sbjct 534376 CAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCAGGTTGTACG 534435 Query 147404 TTTCAATGGCGCTCAT-AACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATG 147462 | ||||||||| ||| ||| ||||||| ||| ||| || || ||||| |||||| Sbjct 534436 TCTCAATGGCG-GCATCCACGCGCGCGCCGTGGATGCCCACCGCCACCCGCATCAGCATG 534494 Query 147463 TGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGGT-CAGAGT 147521 ||||| || || || || | | | | |||| || | ||||| | | | ||| || Sbjct 534495 TGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTTGAGCAGATA-GGAGCGCTCCAGGGT 534553 Query 147522 TTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559 ||||| |||||| | |||||| | |||| | || || Sbjct 534554 CTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTCGT 534591 >seq1473 Length=2736273 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | |||||||||||||| || ||||| || Sbjct 1454284 CCACCTCGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAT 1454225 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| |||| || || ||||| ||||||| | ||||||||| || || Sbjct 1454224 AAGGTGCGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGA 1454165 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| |||||| ||| | | || || ||||| | | |||||| Sbjct 1454164 ATGCCTTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTCGACC 1454105 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || ||||| || || || |||||||| ||||||||| Sbjct 1454104 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATG 1454057 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | || || ||||| || || |||||||| Sbjct 1455196 CCACCTCGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAG 1455137 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| |||| ||||| ||||| | ||||| | ||| ||||| || || Sbjct 1455136 AGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGA 1455077 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| |||||| || | | || || ||||| | ||| || Sbjct 1455076 ATTCCTTCCTTGTCCTGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACC 1455017 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || || || || || || || ||||||||||||||| Sbjct 1455016 TCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTGCATG 1454969 >seq1486 Length=661795 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 47502 GAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAG 47561 ||||| || ||||| || ||| | ||||| ||||| ||||||||||||||||| |||||| Sbjct 353229 GAGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAG 353288 Query 47562 AAGCGCGTCGGCGAATA 47578 |||||||||||||| || Sbjct 353289 AAGCGCGTCGGCGAGTA 353305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 47502 GAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAG 47561 ||||| || ||||| || ||| | ||||| ||||| ||||||||||||||||| |||||| Sbjct 356660 GAGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAG 356601 Query 47562 AAGCGCGTCGGCGAATA 47578 |||||||||||||| || Sbjct 356600 AAGCGCGTCGGCGAGTA 356584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475278640082480