Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 176 4e-39
seq1473 123 2e-23
seq1486 95.1 1e-14
>seq1148
Length=2189075
Score = 176 bits (194), Expect = 4e-39
Identities = 991/1538 (64%), Gaps = 73/1538 (5%)
Strand=Plus/Plus
Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGC-GCCTCAGATACACGTTGCTGGTGAAC 146121
||||||| ||| |||||||||| ||| || | || | | || | |||||||||| ||
Sbjct 533086 GGTTGACGCACTGGAACTCGCCGGAGAGCACCCTGCGTGTG-TATATGTTGCTGGTGTAC 533144
Query 146122 GGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCC 146181
| ||| | ||||||||||| || || |||||||| || | ||||| |||||| ||||
Sbjct 533145 GCCTCAATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATGGGCGCC 533204
Query 146182 ACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTTTTCCCGTAGTTTGGACCAATT 146240
| ||||| ||||||||| ||||| ||| | ||||| ||| ||| | ||| |
Sbjct 533205 AGCAGCAGGCTGTTTCTCACACCGTG-CTTGGCGATCTTCTCCTTGAGTAATGTCCAGTC 533263
Query 146241 CCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCC---GCGGAA 146297
||||| | ||||||| | | |||| || || | | || || | |
Sbjct 533264 CCACA---GCGGCGTGGGAATCCGCTGCCACATGTCATACTGGAGGATCCCCTTGCTG-A 533319
Query 146298 CAGG-GGGCTATTCTCGTACGATTCATAAGGACCGTCGATC-TTGGCCAGTTCGCAGCTA 146355
|||| | || | ||||| || || || |||| | || |||||| ||||||||
Sbjct 533320 CAGGAGAGC---CCGGGTACGTCTCGTAGGGGCCGT-GCTCAGCGGCCAGCTCGCAGCTG 533375
Query 146356 GCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA-GTTGACGCTCCTG-GCCT 146413
|| ||||| || | |||| | ||||| |||| || | |||| | || ||||
Sbjct 533376 GCCTCCAGCGCGGCGTAGTAGAGAGTCTCGAAGATC-TGAATATTGA-GTAGTTGCGCCT 533433
Query 146414 CCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCG 146472
| ||| || | ||| | || | || | ||||||||||| || ||||| | |||
Sbjct 533434 CGGGGCTCTC-AAAGGGCTGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCG 533492
Query 146473 ACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCC---CGCAGTGGGATAGTGG 146529
| |||| ||| ||||| | |||| | ||| ||||| ||| ||| |||| |
Sbjct 533493 ATGCCAATGGGCCGGTGGCGCATGTT--GGAGCGCTGCGCCTCAGGCACCGGG-TAGTAG 533549
Query 146530 TTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGG 146589
||| ||||||||||| ||||||| || |||| | ||| || | ||||
Sbjct 533550 TTGATGTCGATGATCCTGTTGAGGTTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTC 533609
Query 146590 ACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAG 146649
|||| ||| | | | ||||| || |||||| || | ||||| | |
Sbjct 533610 TTGAAGTCGTATG---TGCGCTCGGGGGTGACGTACATGTTGAGCGCCACGGAGGCTAGG 533666
Query 146650 TTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTG 146709
|| || ||||| |||||||| | | || | || ||||| | ||| |||||||||
Sbjct 533667 TTGCACACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTG 533726
Query 146710 CACTTGATGATGCCCAAAtttttttGGTTACTAAACTTG---TTGCAGGGGTCCTTGTAG 146766
||||||||| |||||| || | ||||| || |||| ||||| | |||||||||
Sbjct 533727 CACTTGATGGTGCCCAGGTTCTGCTGGTTGCT---CTTGCGATTGCATGCATCCTTGTAG 533783
Query 146767 AGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATCT-CT 146825
||||||||||| || || || | | ||||| |||| | | || | || ||
Sbjct 533784 AGCATGTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATG--GCGTACCACACCTGCT 533841
Query 146826 GGCCTTT-ACTTGTCTTTCGTACAGTTTATTCTTTTCGTATTTCTCGTACAATATTTCAA 146884
|| |||| || | | | | | | ||| || || |||||| ||||
Sbjct 533842 GGGCTTTCACCACCCGCTTGACCCGGCCCTCCTTCTCATAGCGTGTGTACAAAGCCTCAA 533901
Query 146885 AACTAGAACC---GTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACC 146941
| | ||| | ||||||| ||||| || ||| || ||||| | |||||||
Sbjct 533902 ACTCATCACCCCAGCACTCGTC---CAGGCCAGGGCACTCATTTGGACACATGAGCGACC 533958
Query 146942 ATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCA 147001
| || | || || || | | ||| |||| ||| || ||||| || || | | ||
Sbjct 533959 AGTCCTGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAACA 534018
Query 147002 AGTCGCGAGC-CTTGGCGTCCTCGGAGCCCATGTTGCGTC-TCAAGTTGAGGACATCGTA 147059
||| || || | || ||||| ||| |||| | || ||| | |||| ||| |
Sbjct 534019 GGTCACGGGCGCGCTGC-TCCTCTTTGCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAA 534076
Query 147060 AATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCC 147116
|| || ||||| ||||||| ||| ||||| ||||| ||| || || ||
Sbjct 534077 GATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCTCC 534136
Query 147117 CTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGA 147176
||| || |||| |||| || |||| ||| |||| || | ||||| ||| |||||| |||
Sbjct 534137 CTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTGGA 534196
Query 147177 TTT---TGTGGTGC---CGTTGTA-TTG--AGCG---CTGACGC-TTTGCACGCTCAGCC 147223
|| |||||| || |||| || || | | || || || ||| || |
Sbjct 534197 GTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGGAACGGATGCAGCTGACCGC-CACGC 534255
Query 147224 CGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGT 147283
||| || || || || || || | || ||| | | || | ||||||||| |
Sbjct 534256 CGATGCCACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGATGCCAT 534315
Query 147284 CGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGC 147343
|||||||||| ||||| ||| | ||||||| || ||| || || || ||||
Sbjct 534316 CGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTTGGTGC 534375
Query 147344 CCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCAGACTCATCAATTGATACG 147403
| || || || ||||| ||||||||||||| | | | || | ||||
Sbjct 534376 CAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCAGGTTGTACG 534435
Query 147404 TTTCAATGGCGCTCAT-AACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATG 147462
| ||||||||| ||| ||| ||||||| ||| ||| || || ||||| ||||||
Sbjct 534436 TCTCAATGGCG-GCATCCACGCGCGCGCCGTGGATGCCCACCGCCACCCGCATCAGCATG 534494
Query 147463 TGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGGT-CAGAGT 147521
||||| || || || || | | | | |||| || | ||||| | | | ||| ||
Sbjct 534495 TGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTTGAGCAGATA-GGAGCGCTCCAGGGT 534553
Query 147522 TTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559
||||| |||||| | |||||| | |||| | || ||
Sbjct 534554 CTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTCGT 534591
>seq1473
Length=2736273
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| || | ||| | |||||||||||||| || ||||| ||
Sbjct 1454284 CCACCTCGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAT 1454225
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| |||| || || ||||| ||||||| | ||||||||| || ||
Sbjct 1454224 AAGGTGCGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGA 1454165
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||| ||||||||| |||||| ||| | | || || ||||| | | ||||||
Sbjct 1454164 ATGCCTTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTCGACC 1454105
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || ||||| || || || |||||||| |||||||||
Sbjct 1454104 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATG 1454057
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| || | ||| | || || ||||| || || ||||||||
Sbjct 1455196 CCACCTCGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAG 1455137
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| |||| ||||| ||||| | ||||| | ||| ||||| || ||
Sbjct 1455136 AGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGA 1455077
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| || ||||||||| |||||| || | | || || ||||| | ||| ||
Sbjct 1455076 ATTCCTTCCTTGTCCTGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACC 1455017
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | || | || || || || || || || |||||||||||||||
Sbjct 1455016 TCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTGCATG 1454969
>seq1486
Length=661795
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 47502 GAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAG 47561
||||| || ||||| || ||| | ||||| ||||| ||||||||||||||||| ||||||
Sbjct 353229 GAGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAG 353288
Query 47562 AAGCGCGTCGGCGAATA 47578
|||||||||||||| ||
Sbjct 353289 AAGCGCGTCGGCGAGTA 353305
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 47502 GAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAG 47561
||||| || ||||| || ||| | ||||| ||||| ||||||||||||||||| ||||||
Sbjct 356660 GAGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAG 356601
Query 47562 AAGCGCGTCGGCGAATA 47578
|||||||||||||| ||
Sbjct 356600 AAGCGCGTCGGCGAGTA 356584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475278640082480
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