Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1473 100 3e-16 >seq1473 Length=2736273 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || ||||| || || || ||||| ||||| || || || Sbjct 1452691 ATGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 1452632 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| ||||||||||| || ||| ||||||| | || ||||| || Sbjct 1452631 GAGAGGGTGCGGCCATCTTCCAATTGTTTGCCAGCGAATATCAACCTCTGTTGGTCAGGT 1452572 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || | || ||||| || || || || || || ||| Sbjct 1452571 GGAATGCCTTCCTTGTACTGGATTTTGGCCTTCATATTCTCAACAGTATCACTCCCCTCA 1452512 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || || ||||| ||||| || |||||||| || ||||| Sbjct 1452511 ACCTCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452462 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || ||||| || || || ||||| || || || || ||| Sbjct 1453375 ATGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCG 1453316 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| |||||| || || ||||||| | || ||||| || Sbjct 1453315 GAGAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGA 1453256 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||||||||| || || ||||| || | || || ||||| ||| Sbjct 1453255 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCA 1453196 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || || ||||| ||||| || |||||||| || ||||| Sbjct 1453195 ACCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1453146 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || ||||| || || || ||||| ||||| || || || Sbjct 1453831 ATGCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 1453772 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| |||||| || || ||||||| | || ||||| || Sbjct 1453771 GAGAGGGTCCGTCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGA 1453712 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||||||||| || |||||||| || | || | || || || || ||| Sbjct 1453711 GGAATGCCTTCTTTGTCCTGAATTTTGGCCTTCA-CGTTCTCAACAGTATCACTCCCCTC 1453653 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || || ||||| ||||| || || ||||| |||||||| Sbjct 1453652 AACCTCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTCACAAATATTTGCAT 1453602 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || ||||| || ||||| ||| |||| | | Sbjct 1454488 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTTTGGTCATCTTCCAGTGGC 1454429 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || ||||||| | |||||||| || ||||||||||| || ||||| |||| Sbjct 1454428 TTGCCGGCAAATATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATTTGG 1454369 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || || ||||| || |||||| || || || || | |||||||| Sbjct 1454368 GCCTTGACATTCTCAACAGTGTCACTAGTCTCGACCTCAAGGGTGACGGGCTTGCCGGTA 1454309 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| Sbjct 1454308 AGGGTCTTCACAAATATCTGCAT 1454286 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || ||||| || || || || || ||||| || || || Sbjct 1452919 ATGCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 1452860 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| |||||| || || ||||||| | |||||||| || Sbjct 1452859 GAGAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGA 1452800 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||||||||| || |||||||| |||| ||| || ||||| ||| Sbjct 1452799 GGAATGCCTTCTTTGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCA 1452740 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | |||||||| || || || || ||||| || ||||| Sbjct 1452739 ACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 1452690 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || ||||| || || || ||||| ||||| || || || Sbjct 1453147 ATGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 1453088 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| |||| |||||| || || ||||||| | || ||||| || Sbjct 1453087 GAGAGGGAGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGA 1453028 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||||||||| || || ||||| || | || || ||||| ||| Sbjct 1453027 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCA 1452968 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || || ||||| ||||| || |||||||| || ||||| Sbjct 1452967 ACCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452918 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || ||||| || || || ||||| ||||| || || || Sbjct 1453603 ATGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 1453544 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | |||||| || || ||||||| | || ||||| || Sbjct 1453543 GAGAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGA 1453484 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||||||||| || |||||||| || | ||| || ||||| ||| Sbjct 1453483 GGAATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCA 1453424 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | |||||||| || || || || ||||| |||||||| Sbjct 1453423 ACCTCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 1453374 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || ||||| || || |||||||| ||||| || || || Sbjct 1454059 ATGCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 1454000 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| |||| |||||| || || ||||||| | || ||||| || Sbjct 1453999 GAGAGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGA 1453940 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || ||||| || | || || ||||| ||| Sbjct 1453939 GGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCA 1453880 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || ||||| || || ||||| ||||| || ||||| Sbjct 1453879 ACTTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451792018454920