Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq822 127 3e-24 seq782 95.1 2e-14 seq1113 93.3 6e-14 >seq822 Length=457018 Score = 127 bits (140), Expect = 3e-24 Identities = 166/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 || |||||||| || || ||| || ||||| |||||||| ||||||||| | |||||| Sbjct 363671 TTGACGATGTCGAAGCCCACGCGGCCCCCGAAAGTGCTGGGCTTCCAGTACTCGGGGGAG 363612 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 |||||| ||| ||| ||| ||||| | ||| ||||| || |||| ||| | |||||| Sbjct 363611 CAGATGGGGTTGCCCAGGAGGCCTTTGAGGGAGAACGGCGCACCCATCTCCACCATGCTC 363552 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || ||||||||||| || |||| | | || | | | ||| | ||| | ||| | | Sbjct 363551 TCGCCGAAGATGGCGCCCAGACGAGTCCTCTCCAGCAGCATGCCGGGGTAAAATTCAAGA 363492 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCA-ACTCGGCAGCTATCTCCT 9167 || || | |||||| || | |||||| | | || |||||||||| Sbjct 363491 GCGTCAATGTCGCCGTAAAACTCTTCCAGAGTGAGC-GCTATCTCCT 363446 >seq782 Length=5188642 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| ||| | |||||| |||| | ||| |||||||| | || || ||||||||| Sbjct 4107517 TCGGGCATCAGTGGGTGCCAGTGGTATAAGGTGTTGAACTCAGATGCAATGCGGTTCTGG 4107576 Query 9613 TACT-GAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671 |||| |||| || | | ||| || | ||| || ||||| |||||| ||||| || || Sbjct 4107577 TACTGGAAACGCTG-GCTGAAGAGCAGCTCAGGATCAAATTTTAGCTTGAAGTTATAGCC 4107635 Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 || || |||||||| || | || | ||| || ||||||||||| || Sbjct 4107636 ACTCAGGTGCTGGACGTAGTCCTCAATCACAATCTTGATGGTTTCCCCTGT 4107686 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||| || || | || || ||||| || | | || ||||| || | |||||| Sbjct 4109039 TCACCTACGACTCCCATCGGTGTTGGGCAATCCTGTTGCACTGGAGGGAGGGCTCTCGTG 4109098 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || ||| ||||||||||||| ||||| ||||||| |||||| Sbjct 4109099 TAGTAGGAAAGGTTGGAATATGCTTCCCAGCTTTTGTAATGATAATCTGCATTGTAGGTT 4109158 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCTA 10537 ||||| ||||||||||| | ||| | |||| Sbjct 4109159 GGGGGGCTGTCAATCATGTGGGAGCGAGCTA 4109189 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||||||||||||||| | | ||||| || || |||| ||| || | |||| Sbjct 4108472 TCTTACCCCATGCCCTTTTGCCACTGTGAAGGCAGGACCTCTTTTCATGTCCGATTTAAA 4108531 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 || |||||||||||||| || | ||||| || ||||| ||| |||||||||| || || Sbjct 4108532 GAACTGGTGTGTAAAGTGCTGTGCAAAAAATGCAAACATAAGGCTGGTGCCCTGTGGGTC 4108591 Query 10241 GGGGATAAAGGTCCTCC 10257 ||||| || |||||| Sbjct 4108592 AGGGATGAATTTCCTCC 4108608 >seq1113 Length=2919733 Score = 93.3 bits (102), Expect = 6e-14 Identities = 168/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 8932 GGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTA 8991 ||| | |||||| || | || || || || ||||| ||||||||||| || |||||||| Sbjct 1000877 GGTGGAGGTTTTGACCAAATCGAAGCCCACCTCCCCCCCGAAGGTGCTCGGCTTCCAGTA 1000818 Query 8992 CGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTC 9051 | | || ||||| | ||| ||| | || |||| || || || || |||| || Sbjct 1000817 CTCGGGTGAGCACAAAGGGTTGCCCAGCAAGCCCTTCAGCGAGAAGGGGGCGCCCATTTC 1000758 Query 9052 GATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTA 9111 | ||||| || || ||||||| || |||||||| ||||| | | || || | || Sbjct 1000757 TACCATGCTTTCTCCAAAGATGGACCCAGGACGCGGCTTTTCCAGAAGGATACCCGGATA 1000698 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||| | || |||| || ||| ||| | ||| |||| || || |||| || Sbjct 1000697 GAATTCCAAGGCGTCGATGTGGCCGTAGTACTCCAGCAAACCGGCTGCCATGTCCTCATC 1000638 Query 9172 ACCTAC 9177 | |||| Sbjct 1000637 ATCTAC 1000632 Score = 93.3 bits (102), Expect = 6e-14 Identities = 168/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 8932 GGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTA 8991 ||| | |||||| || | || || || || ||||| ||||||||||| || |||||||| Sbjct 1003612 GGTGGAGGTTTTGACCAAATCGAAGCCCACCTCCCCCCCGAAGGTGCTCGGCTTCCAGTA 1003553 Query 8992 CGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTC 9051 | | || ||||| | ||| ||| | || |||| || || || || |||| || Sbjct 1003552 CTCGGGTGAGCACAAAGGGTTGCCCAGCAAGCCCTTCAGCGAGAAGGGGGCGCCCATTTC 1003493 Query 9052 GATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTA 9111 | ||||| || || ||||||| || |||||||| ||||| | | || || | || Sbjct 1003492 TACCATGCTTTCTCCAAAGATGGACCCAGGACGCGGCTTTTCCAGAAGGATACCCGGATA 1003433 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||| | || |||| || ||| ||| | ||| |||| || || |||| || Sbjct 1003432 GAATTCCAAGGCGTCGATGTGGCCGTAGTACTCCAGCAAACCGGCTGCCATGTCCTCATC 1003373 Query 9172 ACCTAC 9177 | |||| Sbjct 1003372 ATCTAC 1003367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723389865231800