Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 210 3e-49
seq1247 84.2 3e-11
>seq1148
Length=2189075
Score = 210 bits (232), Expect = 3e-49
Identities = 837/1299 (64%), Gaps = 30/1299 (2%)
Strand=Plus/Plus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
|| |||||| | ||||| | ||||| | |||| ||||| || | ||| || || ||||||
Sbjct 533127 TATATGTTGCTGGTGTACGCCTCAATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAG 533186
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022
|| ||||||||||| |||| || |||||||| | | ||| | || |||
Sbjct 533187 GCGGTGGGCATGGGCGCCAGCAGCAGGCTGTTTCTCACACCGTGCTTGGCGATCTTCTCC 533246
Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082
||||| |||||| | || | | || || |||||| ||| ||||||||
Sbjct 533247 TTGAGTAATGTCCAGTCCCACAGCGGCGTGGGAATCCGCTGCCACATGTCATACTGGAGG 533306
Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142
|| || | | | || || ||| | ||||| || ||||| | | | ||||
Sbjct 533307 ATCCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGC 533366
Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202
||| |||| ||||| || || |||| || | ||||| || || || ||| | |
Sbjct 533367 TCGCAGCTGGCCTCCAGCGCGGCGTAGTAGAGAGTCTCGAAGATCTGAATATTGAGTAGT 533426
Query 116203 TTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262
| |||||| | ||||| | | || | ||| || | || || || || |||
Sbjct 533427 TGCGCCTCGGGGCTCTCAAAGGGCTGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGG 533486
Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGA 116319
|| |||| |||||| || || || | ||| || || | || ||| ||| ||
Sbjct 533487 ACGCCGATGCCAATGGGCCGGTGGCGCATGTTGGAGCGCTGCGC---CTCAGGCACCGGG 533543
Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379
|| | || | ||||| | ||| || || || ||| || || || |||| |
Sbjct 533544 TAGTAGTTGATGTCGATGATCCTGTTGAGGTTCTTGACGATGACTTTGGTGACGGCCGCC 533603
Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439
||||| | | | || | |||| ||| |||| ||| | || || | ||
Sbjct 533604 AGCTTCTTGAAGTCGTATGTGCG---CTCGGGGGTGACGTACATGTTGAGCGCCACGGAG 533660
Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499
|| || || ||||| | ||| |||| ||||| || | || ||||| ||||
Sbjct 533661 GCTAGGTTGCACACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAGG 533720
Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559
|| | ||| |||||||||| ||||| || || ||| || || |||||||||
Sbjct 533721 TTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCCTTG 533780
Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCG 116619
|||||||| || ||||| |||||||| || || |||| || || || | ||| || |
Sbjct 533781 TAGAGCATGTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACACCTGC 533840
Query 116620 GCGGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTC 116678
|||| || || || ||| | || ||||||| ||| || |||||| | |||||
Sbjct 533841 TGGGCTTTCACCACCCGC-TTGACCCGGCCCTCCTTCTCATAGCGTGTGTACAAAGCCTC 533899
Query 116679 AAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACC 116737
|||||| |||||| |||| ||| || || || || || |||||| | ||| ||||
Sbjct 533900 AAACTCATCACCC-CAGCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCGACC 533958
Query 116738 ATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 116795
| | || | ||| |||| ||||||||| || |||||||||||||| | ||||
Sbjct 533959 A--GTCCTGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAA 534016
Query 116796 GAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 116854
|| || || ||| ||| || | || || || || ||||| ||||| |
Sbjct 534017 CAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTG-TTCTTCTTCAGCTCCAGGAAGTCGA 534075
Query 116855 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGAC----GACCA 116910
||| || ||||||||| |||||||||| |||| | | || || | ||
Sbjct 534076 AGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGA-AGGCGCCGGGCCGCTTGTTGCCT 534134
Query 116911 GCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCA 116970
|||||| || || | |||||| ||| | || || ||||| || | | || |
Sbjct 534135 CCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTG 534194
Query 116971 GATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCAT 117029
|| | |||||| || || ||| | | | ||| | || | || ||
Sbjct 534195 GAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAG-TGGAACGGATGCAGCTGACCGCCAC 534253
Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089
|| || || |||||| | || ||||| | || |||| | |||| || ||||||| ||
Sbjct 534254 GCCGATGCCACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGATGCC 534313
Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCC--TTGGT 117147
|||||| ||| |||| | || | ||||||||||| |||| ||||||| |||||
Sbjct 534314 ATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTTGGT 534373
Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186
| ||||||||||| || || |||| ||||| |||||
Sbjct 534374 G--CCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAAC 534410
>seq1247
Length=1231281
Score = 84.2 bits (92), Expect = 3e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
||||||| ||| |||||| || || ||| || || || |||||||| || | ||||
Sbjct 216350 CCTCGTCCCGGCTGATGAGCTCGTTGGAGTAGGTGAGGCCGGGCATGAGGCCTCTTTTCT 216409
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658
|||||||| | || || || ||||| ||||||||||| |||||||| || || |
Sbjct 216410 TCAACCAGTAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACCGCTGCAAAAG 216469
Query 127659 CAAATAGACGCTCGGC 127674
| | || ||||||||
Sbjct 216470 CCACAAGTCGCTCGGC 216485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613220561767320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |