Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1148 210 3e-49 seq1247 84.2 3e-11 >seq1148 Length=2189075 Score = 210 bits (232), Expect = 3e-49 Identities = 837/1299 (64%), Gaps = 30/1299 (2%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || |||||| | ||||| | ||||| | |||| ||||| || | ||| || || |||||| Sbjct 533127 TATATGTTGCTGGTGTACGCCTCAATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAG 533186 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| |||| || |||||||| | | ||| | || ||| Sbjct 533187 GCGGTGGGCATGGGCGCCAGCAGCAGGCTGTTTCTCACACCGTGCTTGGCGATCTTCTCC 533246 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082 ||||| |||||| | || | | || || |||||| ||| |||||||| Sbjct 533247 TTGAGTAATGTCCAGTCCCACAGCGGCGTGGGAATCCGCTGCCACATGTCATACTGGAGG 533306 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142 || || | | | || || ||| | ||||| || ||||| | | | |||| Sbjct 533307 ATCCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGC 533366 Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202 ||| |||| ||||| || || |||| || | ||||| || || || ||| | | Sbjct 533367 TCGCAGCTGGCCTCCAGCGCGGCGTAGTAGAGAGTCTCGAAGATCTGAATATTGAGTAGT 533426 Query 116203 TTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262 | |||||| | ||||| | | || | ||| || | || || || || ||| Sbjct 533427 TGCGCCTCGGGGCTCTCAAAGGGCTGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGG 533486 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGA 116319 || |||| |||||| || || || | ||| || || | || ||| ||| || Sbjct 533487 ACGCCGATGCCAATGGGCCGGTGGCGCATGTTGGAGCGCTGCGC---CTCAGGCACCGGG 533543 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || | || | ||||| | ||| || || || ||| || || || |||| | Sbjct 533544 TAGTAGTTGATGTCGATGATCCTGTTGAGGTTCTTGACGATGACTTTGGTGACGGCCGCC 533603 Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 ||||| | | | || | |||| ||| |||| ||| | || || | || Sbjct 533604 AGCTTCTTGAAGTCGTATGTGCG---CTCGGGGGTGACGTACATGTTGAGCGCCACGGAG 533660 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 || || || ||||| | ||| |||| ||||| || | || ||||| |||| Sbjct 533661 GCTAGGTTGCACACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAGG 533720 Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || | ||| |||||||||| ||||| || || ||| || || ||||||||| Sbjct 533721 TTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCCTTG 533780 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCG 116619 |||||||| || ||||| |||||||| || || |||| || || || | ||| || | Sbjct 533781 TAGAGCATGTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACACCTGC 533840 Query 116620 GCGGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTC 116678 |||| || || || ||| | || ||||||| ||| || |||||| | ||||| Sbjct 533841 TGGGCTTTCACCACCCGC-TTGACCCGGCCCTCCTTCTCATAGCGTGTGTACAAAGCCTC 533899 Query 116679 AAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACC 116737 |||||| |||||| |||| ||| || || || || || |||||| | ||| |||| Sbjct 533900 AAACTCATCACCC-CAGCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCGACC 533958 Query 116738 ATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 116795 | | || | ||| |||| ||||||||| || |||||||||||||| | |||| Sbjct 533959 A--GTCCTGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAA 534016 Query 116796 GAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 116854 || || || ||| ||| || | || || || || ||||| ||||| | Sbjct 534017 CAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTG-TTCTTCTTCAGCTCCAGGAAGTCGA 534075 Query 116855 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGAC----GACCA 116910 ||| || ||||||||| |||||||||| |||| | | || || | || Sbjct 534076 AGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGA-AGGCGCCGGGCCGCTTGTTGCCT 534134 Query 116911 GCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCA 116970 |||||| || || | |||||| ||| | || || ||||| || | | || | Sbjct 534135 CCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTG 534194 Query 116971 GATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCAT 117029 || | |||||| || || ||| | | | ||| | || | || || Sbjct 534195 GAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAG-TGGAACGGATGCAGCTGACCGCCAC 534253 Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089 || || || |||||| | || ||||| | || |||| | |||| || ||||||| || Sbjct 534254 GCCGATGCCACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGATGCC 534313 Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCC--TTGGT 117147 |||||| ||| |||| | || | ||||||||||| |||| ||||||| ||||| Sbjct 534314 ATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTTGGT 534373 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 | ||||||||||| || || |||| ||||| ||||| Sbjct 534374 G--CCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAAC 534410 >seq1247 Length=1231281 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| ||| |||||| || || ||| || || || |||||||| || | |||| Sbjct 216350 CCTCGTCCCGGCTGATGAGCTCGTTGGAGTAGGTGAGGCCGGGCATGAGGCCTCTTTTCT 216409 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 |||||||| | || || || ||||| ||||||||||| |||||||| || || | Sbjct 216410 TCAACCAGTAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACCGCTGCAAAAG 216469 Query 127659 CAAATAGACGCTCGGC 127674 | | || |||||||| Sbjct 216470 CCACAAGTCGCTCGGC 216485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613220561767320