Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 212 1e-49
seq354 102 1e-16
seq906 89.7 8e-13
>seq1148
Length=2189075
Score = 212 bits (234), Expect = 1e-49
Identities = 603/903 (67%), Gaps = 38/903 (4%)
Strand=Plus/Plus
Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943
|| |||||||| ||||||| ||| | |||||| | |||| | ||||||||| |
Sbjct 533700 TCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTC 533759
Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCG 205002
||||| || || | |||||||| | |||| ||||| | || |||| ||||||| |||
Sbjct 533760 TTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGAGACTCG 533819
Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCAC--GTACATCCCTTGA 205057
|| || | ||||| | | || | |||| |||| || | | ||| |
Sbjct 533820 ATGA-TGGCGTACCACACCTGCTGGGCTTTCACCACCCGCTTGACCCGGCCCTCCTT--- 533875
Query 205058 GACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCT 205114
||| || |||||||| ||| |||| ||| ||| | || |||||| | ||
Sbjct 533876 --CTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCA---GGCCA 533930
Query 205115 GGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC-ACCCTCTCCATAAA 205173
|| || | || |||||||| || ||||| ||| | | || || ||||||| ||| ||
Sbjct 533931 GGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTG-CTCTCTACCCTCTTCATGAA 533989
Query 205174 CAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAG 205233
||| || |||||| || ||| | ||||| |||||||| | | || | ||
Sbjct 533990 CAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGT 534049
Query 205234 GTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGG 205292
|||||| |||| ||||| ||| || | ||||| |||||||||||| | ||| ||
Sbjct 534050 GTTCTTCTTCAGCTCCAGG-AAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGG 534108
Query 205293 CCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAA 205352
| | ||||| |||| |||||| || ||||||||||| ||| | | | |||| | |
Sbjct 534109 CGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGA 534168
Query 205353 CTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTT 205412
| |||||||| |||||||| ||||||| | | || || |||| | |||| |||
Sbjct 534169 CACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATG---TAGCTGC 534225
Query 205413 CAGCCCTCACGTTGGAGATG---GCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGG 205469
||| | || || || ||| |||| || || || | | |||| ||| |||
Sbjct 534226 CAGTGGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGG 534285
Query 205470 CGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGA 205528
| |||| |||| || ||| ||||||||| ||||| |||||| || | | |||
Sbjct 534286 CACACTGCTTG-AGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGG 534344
Query 205529 TAGCACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTG 205587
|||| | || || |||| ||||||||| |||| ||| || ||||| ||||||
Sbjct 534345 AAGCAGCTGGACAACTGTGGC-CGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTG 534403
Query 205588 GCTGAAGCGCTTCTCGCTCAAA-CA-CCTGTAGGTCTCCAGCACGCTCTCCA-GATCGAA 205644
|||| | |||| || ||| || |||| ||||| | || |||| | ||
Sbjct 534404 CGTGAA--CCATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCG-C 534460
Query 205645 GCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTC 205704
|||||| || || | || | || ||| | | ||| || || | ||| |||| | |
Sbjct 534461 GCCGTGGATGCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCC 534520
Query 205705 GTTCACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTA 205764
||| | |||||||||||||| | ||| ||||| || | |||| || ||| ||| | |
Sbjct 534521 GTTGATCTTGAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAA 534580
Query 205765 GTC 205767
|||
Sbjct 534581 GTC 534583
Score = 134 bits (148), Expect = 2e-26
Identities = 234/338 (69%), Gaps = 2/338 (1%)
Strand=Plus/Plus
Query 204179 AGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTG 204238
||||| ||||||| | ||| || || ||||| ||||||| || ||| | | |||| ||
Sbjct 533079 AGGTGCGGGTTGACGCACTGGAACTCGCCGGAGAGCACCCTGCGTGTGTATATGTTGCTG 533138
Query 204239 GTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATG 204298
||| | | || | | |||||||||||| | ||||| || ||| ||| |||||||||
Sbjct 533139 GTGTACGCCTCAATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATG 533198
Query 204299 GGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTC 204358
|| ||||| |||||| ||| | |||||||| || || | | ||| || | |||
Sbjct 533199 GGCGCCAGCAGCAGGCTGTTTCTCACACCGTGCTTGGCGATCTTCTCCTTGAGTAATGTC 533258
Query 204359 CAGTCGTGCATCGCACTGGGTTTCACGC-CCCACATGTCGAACTGAAAGATGCCTTGACT 204417
||||| || || |||| || ||| ||||||||| |||| | ||| || | ||
Sbjct 533259 CAGTCCCACAGCGGCGTGGGAATC-CGCTGCCACATGTCATACTGGAGGATCCCCTTGCT 533317
Query 204418 GACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGC 204477
||| || |||| ||||||| || || | ||| | ||||||| ||| |||
Sbjct 533318 GACAGGAGAGCCCGGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGC 533377
Query 204478 GGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAA 204515
||| ||| ||||| | ||||| ||||||||||
Sbjct 533378 CTCCAGCGCGGCGTAGTAGAGAGTCTCGAAGATCTGAA 533415
Score = 98.7 bits (108), Expect = 2e-15
Identities = 115/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969
||| || ||| || | | ||||||| | |||||||| ||||| || || ||||
Sbjct 532672 CCTGCTTCCAGCCAAAGAAGTGCATGCTGGTCAGTTTGCCGTAATTGGGCTCTGCGATGT 532731
Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028
| ||||| || |||||||| ||||| ||| | ||| || || || |||||||| || |
Sbjct 532732 GGATGTTTAGCGACTGGCTCTGGTCAATGTA-GGCACCTCGGTCGGCGGCCATGTTAAGC 532790
Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061
| |||||||| |||||||||||||| ||||||
Sbjct 532791 ACTGTCTTCTGGGAAATCTCCCACACAGTCTTG 532823
>seq354
Length=3526367
Score = 102 bits (112), Expect = 1e-16
Identities = 116/153 (76%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973
|| ||| ||||| | ||||||| |||||||| |||||| ||||| ||||| ||
Sbjct 776026 CTTCCAGCCGTAGAAGTGCATGCTGCTCAGTTTGCCGTAGTTGGGCTCGGCAATGTGGAT 776085
Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032
|||||| |||||||| ||||| ||| | |||||| || || || ||||| || | | ||
Sbjct 776086 GTTCAGCGACTGGCTCTGGTCAATGTA-GGCGCCGCGGTCGGCTGCCATTTTCAAGACGG 776144
Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065
| || || || ||||||||||| || ||| |||
Sbjct 776145 TTTTTTGAGAGATCTCCCACACGGTTTTGTACA 776177
>seq906
Length=2194069
Score = 89.7 bits (98), Expect = 8e-13
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 200190 CAGACTGGTTCCGGAGTACATGGACCCTGCAGGATGACCCTTGTAAAAAATATCACGAAG 200249
|||| |||||| |||| |||||||| ||||||||||| ||||| || | ||| | ||||
Sbjct 919609 CAGAGTGGTTCAGGAGCACATGGACTCTGCAGGATGATCCTTGCAAGAGATACTATGAAG 919668
Query 200250 TGCTCATTATCAACCCCGTTCTATTAGTCCCTCCAACCAAGG 200291
| ||||| ||||||| |||| | || ||||| |||||||
Sbjct 919669 TCCTCATGGTCAACCCTATTCTGCTGGTACCTCCCACCAAGG 919710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794783693551120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |