Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1148 212 1e-49 seq354 102 1e-16 seq906 89.7 8e-13 >seq1148 Length=2189075 Score = 212 bits (234), Expect = 1e-49 Identities = 603/903 (67%), Gaps = 38/903 (4%) Strand=Plus/Plus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || |||||||| ||||||| ||| | |||||| | |||| | ||||||||| | Sbjct 533700 TCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTC 533759 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCG 205002 ||||| || || | |||||||| | |||| ||||| | || |||| ||||||| ||| Sbjct 533760 TTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGAGACTCG 533819 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCAC--GTACATCCCTTGA 205057 || || | ||||| | | || | |||| |||| || | | ||| | Sbjct 533820 ATGA-TGGCGTACCACACCTGCTGGGCTTTCACCACCCGCTTGACCCGGCCCTCCTT--- 533875 Query 205058 GACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCT 205114 ||| || |||||||| ||| |||| ||| ||| | || |||||| | || Sbjct 533876 --CTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCA---GGCCA 533930 Query 205115 GGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC-ACCCTCTCCATAAA 205173 || || | || |||||||| || ||||| ||| | | || || ||||||| ||| || Sbjct 533931 GGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTG-CTCTCTACCCTCTTCATGAA 533989 Query 205174 CAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAG 205233 ||| || |||||| || ||| | ||||| |||||||| | | || | || Sbjct 533990 CAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGT 534049 Query 205234 GTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGG 205292 |||||| |||| ||||| ||| || | ||||| |||||||||||| | ||| || Sbjct 534050 GTTCTTCTTCAGCTCCAGG-AAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGG 534108 Query 205293 CCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAA 205352 | | ||||| |||| |||||| || ||||||||||| ||| | | | |||| | | Sbjct 534109 CGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGA 534168 Query 205353 CTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTT 205412 | |||||||| |||||||| ||||||| | | || || |||| | |||| ||| Sbjct 534169 CACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATG---TAGCTGC 534225 Query 205413 CAGCCCTCACGTTGGAGATG---GCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGG 205469 ||| | || || || ||| |||| || || || | | |||| ||| ||| Sbjct 534226 CAGTGGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGG 534285 Query 205470 CGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGA 205528 | |||| |||| || ||| ||||||||| ||||| |||||| || | | ||| Sbjct 534286 CACACTGCTTG-AGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGG 534344 Query 205529 TAGCACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTG 205587 |||| | || || |||| ||||||||| |||| ||| || ||||| |||||| Sbjct 534345 AAGCAGCTGGACAACTGTGGC-CGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTG 534403 Query 205588 GCTGAAGCGCTTCTCGCTCAAA-CA-CCTGTAGGTCTCCAGCACGCTCTCCA-GATCGAA 205644 |||| | |||| || ||| || |||| ||||| | || |||| | || Sbjct 534404 CGTGAA--CCATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCG-C 534460 Query 205645 GCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTC 205704 |||||| || || | || | || ||| | | ||| || || | ||| |||| | | Sbjct 534461 GCCGTGGATGCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCC 534520 Query 205705 GTTCACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTA 205764 ||| | |||||||||||||| | ||| ||||| || | |||| || ||| ||| | | Sbjct 534521 GTTGATCTTGAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAA 534580 Query 205765 GTC 205767 ||| Sbjct 534581 GTC 534583 Score = 134 bits (148), Expect = 2e-26 Identities = 234/338 (69%), Gaps = 2/338 (1%) Strand=Plus/Plus Query 204179 AGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTG 204238 ||||| ||||||| | ||| || || ||||| ||||||| || ||| | | |||| || Sbjct 533079 AGGTGCGGGTTGACGCACTGGAACTCGCCGGAGAGCACCCTGCGTGTGTATATGTTGCTG 533138 Query 204239 GTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATG 204298 ||| | | || | | |||||||||||| | ||||| || ||| ||| ||||||||| Sbjct 533139 GTGTACGCCTCAATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATG 533198 Query 204299 GGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTC 204358 || ||||| |||||| ||| | |||||||| || || | | ||| || | ||| Sbjct 533199 GGCGCCAGCAGCAGGCTGTTTCTCACACCGTGCTTGGCGATCTTCTCCTTGAGTAATGTC 533258 Query 204359 CAGTCGTGCATCGCACTGGGTTTCACGC-CCCACATGTCGAACTGAAAGATGCCTTGACT 204417 ||||| || || |||| || ||| ||||||||| |||| | ||| || | || Sbjct 533259 CAGTCCCACAGCGGCGTGGGAATC-CGCTGCCACATGTCATACTGGAGGATCCCCTTGCT 533317 Query 204418 GACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGC 204477 ||| || |||| ||||||| || || | ||| | ||||||| ||| ||| Sbjct 533318 GACAGGAGAGCCCGGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGC 533377 Query 204478 GGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAA 204515 ||| ||| ||||| | ||||| |||||||||| Sbjct 533378 CTCCAGCGCGGCGTAGTAGAGAGTCTCGAAGATCTGAA 533415 Score = 98.7 bits (108), Expect = 2e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || | | ||||||| | |||||||| ||||| || || |||| Sbjct 532672 CCTGCTTCCAGCCAAAGAAGTGCATGCTGGTCAGTTTGCCGTAATTGGGCTCTGCGATGT 532731 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||| || |||||||| ||||| ||| | ||| || || || |||||||| || | Sbjct 532732 GGATGTTTAGCGACTGGCTCTGGTCAATGTA-GGCACCTCGGTCGGCGGCCATGTTAAGC 532790 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | |||||||| |||||||||||||| |||||| Sbjct 532791 ACTGTCTTCTGGGAAATCTCCCACACAGTCTTG 532823 >seq354 Length=3526367 Score = 102 bits (112), Expect = 1e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| |||||||| |||||| ||||| ||||| || Sbjct 776026 CTTCCAGCCGTAGAAGTGCATGCTGCTCAGTTTGCCGTAGTTGGGCTCGGCAATGTGGAT 776085 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 |||||| |||||||| ||||| ||| | |||||| || || || ||||| || | | || Sbjct 776086 GTTCAGCGACTGGCTCTGGTCAATGTA-GGCGCCGCGGTCGGCTGCCATTTTCAAGACGG 776144 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 | || || || ||||||||||| || ||| ||| Sbjct 776145 TTTTTTGAGAGATCTCCCACACGGTTTTGTACA 776177 >seq906 Length=2194069 Score = 89.7 bits (98), Expect = 8e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 200190 CAGACTGGTTCCGGAGTACATGGACCCTGCAGGATGACCCTTGTAAAAAATATCACGAAG 200249 |||| |||||| |||| |||||||| ||||||||||| ||||| || | ||| | |||| Sbjct 919609 CAGAGTGGTTCAGGAGCACATGGACTCTGCAGGATGATCCTTGCAAGAGATACTATGAAG 919668 Query 200250 TGCTCATTATCAACCCCGTTCTATTAGTCCCTCCAACCAAGG 200291 | ||||| ||||||| |||| | || ||||| ||||||| Sbjct 919669 TCCTCATGGTCAACCCTATTCTGCTGGTACCTCCCACCAAGG 919710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794783693551120