Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 125 2e-23
>seq1473
Length=2736273
Score = 125 bits (138), Expect = 2e-23
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | ||||||||| ||||| || |||||||| |||| ||||||||||| | ||
Sbjct 1453823 TCGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 1453764
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
|| |||||||||||| || || || || || || | | ||| ||||| ||| ||| ||
Sbjct 1453763 CCGTCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCC 1453704
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|||| |||||||| || ||||||| || || || || | || || || |
Sbjct 1453703 TTCTTTGTCCTGAATTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAACCTCAAG 1453644
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||| ||||| || || || || |||||||| |||||
Sbjct 1453643 AGTGACAGTCTTGCCAGTTAGGGTCTTCACAAATATTTG 1453605
Score = 118 bits (130), Expect = 2e-21
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||||||||| ||||| || ||||||||||||| ||||||||| | || ||
Sbjct 2588178 CGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGACAGTGTG 2588119
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||| || ||||| || || ||||| | | ||||||||| || ||| |||
Sbjct 2588118 CGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCT 2588059
Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| ||||| || ||| || || || || | |||||| | | ||| || || |
Sbjct 2588058 TCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCAAG 2588000
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || ||||| || ||||| || || ||
Sbjct 2587999 GGTGATTGTCTTGCCAGTGAGCGTCTTCACGAAGATCTG 2587961
Score = 116 bits (128), Expect = 9e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | ||||||||| ||||| || ||||| || |||| ||||||||||| | ||
Sbjct 1452911 TCGCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGT 1452852
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| ||||||||||| || || || || || || | | ||||||||| ||| ||| ||
Sbjct 1452851 GCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCC 1452792
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|||| |||||||| || ||| || ||| || ||||| | || || || |
Sbjct 1452791 TTCTTTGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAACCTCAAG 1452732
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || ||||| || |||||||| || ||
Sbjct 1452731 GGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTG 1452693
Score = 116 bits (128), Expect = 9e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | || |||||| ||||| || |||||||| |||| ||||||||||| | ||
Sbjct 1453595 TCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 1453536
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| |||||||| || || || || || || || | | ||| ||||| ||| ||| ||
Sbjct 1453535 GCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCC 1453476
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|||| |||||||| || |||||| ||| || ||||| | || || || |
Sbjct 1453475 TTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAACCTCTAG 1453416
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || ||||| || |||||||| |||||
Sbjct 1453415 GGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTG 1453377
Score = 116 bits (128), Expect = 9e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | ||||||||| ||||| || || ||||| |||| ||||||||||| | |||
Sbjct 1454051 TCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGAGT 1453992
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| ||||||||||| || || || || || || | | ||| ||||| ||| ||| ||
Sbjct 1453991 GCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCC 1453932
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
||| ||||| || || |||||| || || ||||| || || || || |
Sbjct 1453931 TTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAACTTCAAG 1453872
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || ||||||||||| || ||
Sbjct 1453871 GGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTG 1453833
Score = 116 bits (128), Expect = 9e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||||||||| ||||| || |||||||| |||| ||||||||||| | ||| | || ||
Sbjct 2590189 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCGTC 2590248
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| || || ||||| | | ||||||||| || ||| ||||| ||
Sbjct 2590249 TTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTC 2590308
Query 199537 CTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595
||| || ||| || || || || | ||||| | | || || || | ||||| |
Sbjct 2590309 CTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGG 2590367
Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||| || ||||| || |||||||| || ||
Sbjct 2590368 TCTTGCCAGTGAGGGTCTTCACAAAGATCTG 2590398
Score = 107 bits (118), Expect = 5e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | ||||||||| || || || ||||| ||||||| ||||||||||| || ||
Sbjct 1454279 TCGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGATAAGGT 1454220
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| ||||||||| | ||||| || || ||||| | | |||||| || || ||| ||
Sbjct 1454219 GCGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCC 1454160
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
||| ||||| || || |||||| || || ||||| | || || || |
Sbjct 1454159 TTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTCGACCTCAAG 1454100
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || ||||| || || ||||| || ||
Sbjct 1454099 GGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTG 1454061
Score = 107 bits (118), Expect = 5e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||||||||| ||||| || |||||||| |||| ||||||||| | | || | |||||
Sbjct 2587714 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATC 2587655
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| || || || || | | ||||||||| || ||| ||||| ||
Sbjct 2587654 TTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 2587595
Query 199537 CTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595
||| || ||| || || || || | ||||| | | || || || | ||||| |
Sbjct 2587594 CTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGG 2587536
Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||| || ||||| || |||||||| || ||
Sbjct 2587535 TCTTGCCAGTGAGGGTCTTCACAAAGATCTG 2587505
Score = 105 bits (116), Expect = 2e-17
Identities = 159/223 (71%), Gaps = 5/223 (2%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||||||||| ||||| || ||||| || |||| ||||||||||| | || | |||||
Sbjct 1452446 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 1452387
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||| ||| || || || ||||| | | ||||| || ||| ||| ||||| ||
Sbjct 1452386 TTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCCTTGTC 1452327
Query 199537 CTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595
||| || ||| || || || || || ||||| | ||| || || | ||||| |
Sbjct 1452326 CTGGAT-TTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTGATGG 1452268
Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638
|||| || || || || |||||||| ||||| |||||| ||
Sbjct 1452267 TCTTGCCAGTTAGGGTCTTCACAAAGATTTG---CATTTTTGC 1452228
Score = 105 bits (116), Expect = 2e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | |||||| || || || || | ||||||||||| |||||| |||| | ||
Sbjct 1454963 TCGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCAGAGAGGGT 1454904
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| |||||||| ||||||||||| || ||||| || | || ||||| || ||| ||
Sbjct 1454903 ACGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGGGGAATACC 1454844
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
||| ||||| || || ||| || || || || || | | ||| || || |
Sbjct 1454843 TTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCAACCTCAAG 1454784
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620
||||| ||||| || ||||| || ||||||||
Sbjct 1454783 GGTGATGGTCTTGCCAGTGAGGGTCTTCACAAA 1454751
Score = 93.3 bits (102), Expect = 1e-13
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | || |||||| ||||| || |||||||| |||| ||||||||||| | |
Sbjct 1453139 TCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGA 1453080
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| ||||||||||| || || || || || || | | ||| ||||| ||| ||| ||
Sbjct 1453079 GCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCC 1453020
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|||| ||||| || || |||||| || || ||||| | || || || |
Sbjct 1453019 TTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACCTCAAG 1452960
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||| ||||| || || || || || ||||| || ||
Sbjct 1452959 AGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTG 1452921
Score = 89.7 bits (98), Expect = 1e-12
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | || |||||| ||||| || |||||||| || | ||||||||| | | ||
Sbjct 1453367 TCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT 1453308
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| ||||||||||| || || || || || || | | ||| ||||| ||| ||| ||
Sbjct 1453307 GCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCC 1453248
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|||| ||||| || || |||||| || || ||||| | || || || |
Sbjct 1453247 TTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACCTCAAG 1453188
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||| ||||| || || || || || ||||| || ||
Sbjct 1453187 AGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTG 1453149
Score = 87.8 bits (96), Expect = 4e-12
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | ||||||||| ||||| || || || || |||| |||||| |||| | ||
Sbjct 1455191 TCGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGT 1455132
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| |||||||| | || || || || || || | | ||| || || || ||||||
Sbjct 1455131 GCGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCC 1455072
Query 199528 TTCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586
||| ||||| || ||| |||| ||| || || ||||| | || || || |
Sbjct 1455071 TTCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACCTCAA 1455013
Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| |||||||| || || || ||||||||||| ||
Sbjct 1455012 GAGTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTG 1454973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178357022919259
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