Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1473 125 2e-23 >seq1473 Length=2736273 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||||||||| ||||| || |||||||| |||| ||||||||||| | || Sbjct 1453823 TCGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 1453764 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||||||| || || || || || || | | ||| ||||| ||| ||| || Sbjct 1453763 CCGTCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCC 1453704 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| |||||||| || ||||||| || || || || | || || || | Sbjct 1453703 TTCTTTGTCCTGAATTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAACCTCAAG 1453644 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||||| || || || || |||||||| ||||| Sbjct 1453643 AGTGACAGTCTTGCCAGTTAGGGTCTTCACAAATATTTG 1453605 Score = 118 bits (130), Expect = 2e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||||||||| ||||| || ||||||||||||| ||||||||| | || || Sbjct 2588178 CGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGACAGTGTG 2588119 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || ||||| || || ||||| | | ||||||||| || ||| ||| Sbjct 2588118 CGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCT 2588059 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| || ||| || || || || | |||||| | | ||| || || | Sbjct 2588058 TCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCAAG 2588000 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || ||||| || || || Sbjct 2587999 GGTGATTGTCTTGCCAGTGAGCGTCTTCACGAAGATCTG 2587961 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||||||||| ||||| || ||||| || |||| ||||||||||| | || Sbjct 1452911 TCGCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGT 1452852 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||| || || || || || || | | ||||||||| ||| ||| || Sbjct 1452851 GCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCC 1452792 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| |||||||| || ||| || ||| || ||||| | || || || | Sbjct 1452791 TTCTTTGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAACCTCAAG 1452732 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || |||||||| || || Sbjct 1452731 GGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTG 1452693 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || |||||| ||||| || |||||||| |||| ||||||||||| | || Sbjct 1453595 TCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 1453536 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| || || || || || || || | | ||| ||||| ||| ||| || Sbjct 1453535 GCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCC 1453476 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| |||||||| || |||||| ||| || ||||| | || || || | Sbjct 1453475 TTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAACCTCTAG 1453416 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || |||||||| ||||| Sbjct 1453415 GGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTG 1453377 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||||||||| ||||| || || ||||| |||| ||||||||||| | ||| Sbjct 1454051 TCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGAGT 1453992 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||| || || || || || || | | ||| ||||| ||| ||| || Sbjct 1453991 GCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCC 1453932 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || || |||||| || || ||||| || || || || | Sbjct 1453931 TTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAACTTCAAG 1453872 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || ||||||||||| || || Sbjct 1453871 GGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTG 1453833 Score = 116 bits (128), Expect = 9e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || |||||||| |||| ||||||||||| | ||| | || || Sbjct 2590189 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCGTC 2590248 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| | | ||||||||| || ||| ||||| || Sbjct 2590249 TTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTC 2590308 Query 199537 CTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 ||| || ||| || || || || | ||||| | | || || || | ||||| | Sbjct 2590309 CTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGG 2590367 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || ||||| || |||||||| || || Sbjct 2590368 TCTTGCCAGTGAGGGTCTTCACAAAGATCTG 2590398 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||||||||| || || || ||||| ||||||| ||||||||||| || || Sbjct 1454279 TCGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGATAAGGT 1454220 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||| | ||||| || || ||||| | | |||||| || || ||| || Sbjct 1454219 GCGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCC 1454160 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || || |||||| || || ||||| | || || || | Sbjct 1454159 TTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTCGACCTCAAG 1454100 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || ||||| || || Sbjct 1454099 GGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTG 1454061 Score = 107 bits (118), Expect = 5e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || |||||||| |||| ||||||||| | | || | ||||| Sbjct 2587714 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATC 2587655 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || || || | | ||||||||| || ||| ||||| || Sbjct 2587654 TTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 2587595 Query 199537 CTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 ||| || ||| || || || || | ||||| | | || || || | ||||| | Sbjct 2587594 CTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGG 2587536 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || ||||| || |||||||| || || Sbjct 2587535 TCTTGCCAGTGAGGGTCTTCACAAAGATCTG 2587505 Score = 105 bits (116), Expect = 2e-17 Identities = 159/223 (71%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || ||||| || |||| ||||||||||| | || | ||||| Sbjct 1452446 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 1452387 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| ||| || || || ||||| | | ||||| || ||| ||| ||||| || Sbjct 1452386 TTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCCTTGTC 1452327 Query 199537 CTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 ||| || ||| || || || || || ||||| | ||| || || | ||||| | Sbjct 1452326 CTGGAT-TTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTGATGG 1452268 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638 |||| || || || || |||||||| ||||| |||||| || Sbjct 1452267 TCTTGCCAGTTAGGGTCTTCACAAAGATTTG---CATTTTTGC 1452228 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | |||||| || || || || | ||||||||||| |||||| |||| | || Sbjct 1454963 TCGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCAGAGAGGGT 1454904 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| ||||||||||| || ||||| || | || ||||| || ||| || Sbjct 1454903 ACGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGGGGAATACC 1454844 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || || ||| || || || || || | | ||| || || | Sbjct 1454843 TTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCAACCTCAAG 1454784 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 ||||| ||||| || ||||| || |||||||| Sbjct 1454783 GGTGATGGTCTTGCCAGTGAGGGTCTTCACAAA 1454751 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || |||||| ||||| || |||||||| |||| ||||||||||| | | Sbjct 1453139 TCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGA 1453080 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||| || || || || || || | | ||| ||||| ||| ||| || Sbjct 1453079 GCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCC 1453020 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| ||||| || || |||||| || || ||||| | || || || | Sbjct 1453019 TTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACCTCAAG 1452960 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||||| || || || || || ||||| || || Sbjct 1452959 AGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTG 1452921 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || |||||| ||||| || |||||||| || | ||||||||| | | || Sbjct 1453367 TCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT 1453308 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||| || || || || || || | | ||| ||||| ||| ||| || Sbjct 1453307 GCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCC 1453248 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| ||||| || || |||||| || || ||||| | || || || | Sbjct 1453247 TTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACCTCAAG 1453188 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||||| || || || || || ||||| || || Sbjct 1453187 AGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTG 1453149 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||||||||| ||||| || || || || |||| |||||| |||| | || Sbjct 1455191 TCGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGT 1455132 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| | || || || || || || | | ||| || || || |||||| Sbjct 1455131 GCGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCC 1455072 Query 199528 TTCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| ||||| || ||| |||| ||| || || ||||| | || || || | Sbjct 1455071 TTCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACCTCAA 1455013 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || || || ||||||||||| || Sbjct 1455012 GAGTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTG 1454973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178357022919259