Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq809 113 3e-19
seq21828 86.0 5e-11
>seq809
Length=886213
Score = 113 bits (124), Expect = 3e-19
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || | ||||| || | |||||| |||||||||||||| || || | || ||||
Sbjct 477108 TTTTTGTCCAAGCCATATGCGATAGCAGCTGCAGTTGGTTCATTGATGATACGCAGAACA 477167
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || |||| ||| ||||||||||||| || || || | ||| ||||| || || ||
Sbjct 477168 TTGAGCCCAGAGATTGTTCCTGCATCTTTTGTAGCCTGGCGTTGGGAATCATTGAAGTAG 477227
Query 518285 GCAGGAACAGTAATAACGGCAT 518306
|| || || |||||||| ||||
Sbjct 477228 GCGGGCACCGTAATAACAGCAT 477249
Score = 104 bits (114), Expect = 2e-16
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582
|||| | || ||||| || || |||||| | |||| ||||||||||| || |||||
Sbjct 478781 CAAAGACTGTGTTGGTGGGGTTCATTGCAACCTGATTCTTGGCTGCATCACCTATCAGCC 478840
Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642
|| || ||||| || | ||||| || || || | || ||||| ||||| ||||
Sbjct 478841 TCTCGGTGTCTGTGAAGGCCACATAACTAGGTGTGGTCCTGTTTCCTTGGTCATTTGCAA 478900
Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702
| ||||||||||| |||| || ||||||| ||||| | || || || | |||||
Sbjct 478901 TGATTTCAACTTTTCCATGCTGGAATACACCAACACAGGAGTAGGTGGTCCCCAGATCAA 478960
Query 518703 TACCAATAGC 518712
|||||| |||
Sbjct 478961 TACCAACAGC 478970
>seq21828
Length=283
Score = 86.0 bits (94), Expect = 5e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 366994 GTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATT 367053
|| || ||||| || || ||||| ||||| ||| ||||||| |||||| | ||| ||
Sbjct 151 GTTGTTGCCACCATTGCCTTTGGCATGGGCATTGATAAACCTGATGTTCGTTATGTGATC 92
Query 367054 CATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGT 367113
||| ||| || || | ||||||| |||| |||||||||| || || || ||||||
Sbjct 91 CATCATGATATACCTAAAAGTATTGAAAGTTACTATCAAGAAACAGGAAGGGCTGGTCGT 32
Query 367114 GATGG 367118
|||||
Sbjct 31 GATGG 27
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3778967630140162
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |