Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq809 113 3e-19 seq21828 86.0 5e-11 >seq809 Length=886213 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| || | |||||| |||||||||||||| || || | || |||| Sbjct 477108 TTTTTGTCCAAGCCATATGCGATAGCAGCTGCAGTTGGTTCATTGATGATACGCAGAACA 477167 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| ||| ||||||||||||| || || || | ||| ||||| || || || Sbjct 477168 TTGAGCCCAGAGATTGTTCCTGCATCTTTTGTAGCCTGGCGTTGGGAATCATTGAAGTAG 477227 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || |||||||| |||| Sbjct 477228 GCGGGCACCGTAATAACAGCAT 477249 Score = 104 bits (114), Expect = 2e-16 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||||| || || |||||| | |||| ||||||||||| || ||||| Sbjct 478781 CAAAGACTGTGTTGGTGGGGTTCATTGCAACCTGATTCTTGGCTGCATCACCTATCAGCC 478840 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || || ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 478841 TCTCGGTGTCTGTGAAGGCCACATAACTAGGTGTGGTCCTGTTTCCTTGGTCATTTGCAA 478900 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || ||||||| ||||| | || || || | ||||| Sbjct 478901 TGATTTCAACTTTTCCATGCTGGAATACACCAACACAGGAGTAGGTGGTCCCCAGATCAA 478960 Query 518703 TACCAATAGC 518712 |||||| ||| Sbjct 478961 TACCAACAGC 478970 >seq21828 Length=283 Score = 86.0 bits (94), Expect = 5e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 366994 GTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATT 367053 || || ||||| || || ||||| ||||| ||| ||||||| |||||| | ||| || Sbjct 151 GTTGTTGCCACCATTGCCTTTGGCATGGGCATTGATAAACCTGATGTTCGTTATGTGATC 92 Query 367054 CATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGT 367113 ||| ||| || || | ||||||| |||| |||||||||| || || || |||||| Sbjct 91 CATCATGATATACCTAAAAGTATTGAAAGTTACTATCAAGAAACAGGAAGGGCTGGTCGT 32 Query 367114 GATGG 367118 ||||| Sbjct 31 GATGG 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778967630140162