Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 176 6e-39
seq1247 96.9 4e-15
seq1486 84.2 3e-11
>seq1148
Length=2189075
Score = 176 bits (194), Expect = 6e-39
Identities = 946/1493 (63%), Gaps = 44/1493 (3%)
Strand=Plus/Minus
Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670
||| ||| ||||| | |||||||| ||| | || ||||| || | | ||| | |
Sbjct 534503 CCCGCAGCACATGCTGATGCGGGTGGCGGTGGGCATCCACGGCGCGCGCGTGGATGCCGC 534444
Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCT 111729
| ||||| ||| || | | || | | ||| |||| ||||| |||| || || |
Sbjct 534443 CATTGAGACGTACAACCTGCTTTCA-GAGAGATGGTTCACGCACGCCTCACCCACTCTTT 534385
Query 111730 TCAACGCTGGTACACCAA--GACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787
|||||||||| |||||| | || || ||||||| || ||||| | || | |||||
Sbjct 534384 TCAACGCTGG--CACCAACCGGCCACAGTTGTCCAGCTGCTTCCTGCTAGCCATGAAGGA 534327
Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847
|| ||| ||||||| |||| ||| |||| | ||||||| ||||| || | |||
Sbjct 534326 CGACAGCATCGATGGCATCTACGACACGCTCAAGCAGTGTGCCCTCATCTCCAAATCGGC 534267
Query 111848 TGGTGGTATCGGGATG-----CACATCCATGATGTC-AGAGCCAACAAGTCTCGTATTAG 111901
||||| ||||| || || | ||| || | | || | | |||
Sbjct 534266 AGGTGGCATCGGCGTGGCGGTCAGCTGCATCCGTTCCACTGGCAGCTACA-TCGCC---- 534212
Query 111902 AGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 111961
|| || ||||| | || | || | | || ||||| || || | ||| ||| ||
Sbjct 534211 -GGCACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTGCGTGTCTACAACAACACGGC 534153
Query 111962 GCGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGA 112015
|||||| || |||| | || ||| | | || | |||| | || || ||
Sbjct 534152 GCGCTACGTGGACCAGGGAGGCAACAAGCGGCCC---GGCGCCTTCGCCATGTACCTGGA 534096
Query 112016 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075
||| |||||| || ||| | || ||||| ||| || ||| ||| | |||||
Sbjct 534095 GCCGTGGCACTTTGACATCTTCGACTTCCTGGAGCTGAAGAAGAACACAGGCAAAGAGGA 534036
Query 112076 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 112135
| ||| ||| || || |||| || ||||||||| |||||||| ||||||||||| ||
Sbjct 534035 GCAGCGCGCCCGTGACCTGTTCTTCGGTCTCTGGATCCCAGATCTGTTCATGAAGAGGGT 533976
Query 112136 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TG 112194
||| | | ||||| ||| | |||||| | || || || || ||| ||
Sbjct 533975 AGAGAGCAACCAGGACTGGTCGCTCATGTGTCCAAATGAGTGCCCTGGCCTGGACGAGTG 533916
Query 112195 CCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG 112254
| | |||||| |||||||| || | |||||| || ||| | || | |||| |
Sbjct 533915 CTG-GGGTGATGAGTTTGAGGCTTTGTACACACGCTATGAGAAGGAGGGCCGGGTCAAGC 533857
Query 112255 CGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 112314
| |||| ||| | |||||| | || || || ||||||| || ||||| || |
Sbjct 533856 GGGTGGTGAAAGCCCAGCAGGTGTGGTACGCCATCATCGAGTCTCAGACAGAGACGGGCA 533797
Query 112315 CACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 112374
| || || ||||| ||||| || || || || | ||||| || || |||| ||||
Sbjct 533796 CGCCGTACATGCTCTACAAGGATGCATGCAATCGCAAGAGCAACCAGCAGAACCTGGGCA 533737
Query 112375 TGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 112434
|||||| | |||||| || || || ||| | |||| || | | || ||| ||
Sbjct 533736 CCATCAAGTGCAGCAACCTGTGCACGGAGATCGTCGAATACACCAGCCAGGACGAGGTGG 533677
Query 112435 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACAT 112494
| ||||| ||||| || || | || ||| || ||| || || ||| ||||
Sbjct 533676 CCGTGTGCAACCTAGCCTCCGTGGCGCTCAACATGTACGTCACCCCCGAG---CGCACAT 533620
Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554
|| | | || || | || || ||| || || ||||| ||||| | |
Sbjct 533619 ACGACTTCAAGAAGCTGGCGGCCGTCACCAAAGTCATCGTCAAGAACCTCAACAGGATCA 533560
Query 112555 TTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611
| || | || | ||||| || |||| || | || || ||| | ||||| |
Sbjct 533559 TCGACATCAACTACTACCCGGTGCCTGAG---GCGCAGCGCTCCAACATGCGCCACCGGC 533503
Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 112671
| ||||| |||| ||||| || || || || | |||||||| || || | ||||
Sbjct 533502 CCATTGGCATCGGCGTCCAGGGGCTGGCCGACGCCTTCATTCTCATGCGGCAGCCCTTTG 533443
Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731
| | ||| ||| | | ||||| | || || ||||| | || ||||||| |
Sbjct 533442 AGAGCCCCGAGGCGCAACTACTCAATATTCAGATCTTCGAGACTCTCTACTACGCCGCGC 533383
Query 112732 TTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791
| ||||| || | ||| |||| | | | || || || || || | ||| ||||
Sbjct 533382 TGGAGGCCAGCTGCGAGCTGGCCGCTGAGCACGGCCCCTACGAGACGTACCCGGGCTCTC 533323
Query 112792 CAGCTTCA-CAAGGGG-TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 112849
| | ||| ||||||| | || || | ||| |||||| | | ||| || | |
Sbjct 533322 CTG--TCAGCAAGGGGATCCTCCAGTATGACATGTGGCAGCGGATTCCCACGCCGCTGTG 533265
Query 112850 CGACTGGGACGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908
|||| |||| | |||||||| ||| || | ||| | | ||||| || ||
Sbjct 533264 GGACT-GGACATTACTCAAGGAGAAGATCGCCAAGCACGGTGTGAGAAACAGCCTGCTGC 533206
Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968
|||| || ||||| || |||||||| || || ||| | || || || || | | ||||
Sbjct 533205 TGGCGCCCATGCCCACCGCCTCCACTGCGCAGATCCTTGGCAACAACGAGTCCATTGAGG 533146
Query 112969 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACA 113028
| ||||| | ||||| || | || ||| | || ||||| | ||||||
Sbjct 533145 CGTACACCAGCAACATATACACACGCAGGGTGCTCTCCGGCGAGTTCCAGTGCGTCAACC 533086
Query 113029 AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081
||| || || | || |||| |||| || || ||| | |||| ||||||
Sbjct 533085 CGCACCTACTGAAGGATCTCACTGAGAGGGGGCTATGGAGCGAGGACATGAAG 533033
>seq1247
Length=1231281
Score = 96.9 bits (106), Expect = 4e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 102177 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236
|| |||||||| | || ||||| || ||||| ||||||||||| || |||||| |
Sbjct 216485 GCCGAGCGACTTGTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 216426
Query 102237 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 102296
|| || || ||| | ||||| |||| |||||||| || ||| || ||||||||||||
Sbjct 216425 GCCATCTACTGGTTGAAGAAAAGAGGCCTCATGCCCGGCCTCACCTACTCCAACGAGCTC 216366
Query 102297 ATCTCTCGTGACGAGG 102312
||| || |||||||
Sbjct 216365 ATCAGCCGGGACGAGG 216350
>seq1486
Length=661795
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263
|| ||||| ||||||||||| || |||||| ||| || | ||||| ||||| || ||
Sbjct 352485 GTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTGAAGAAACGCGGC 352544
Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312
|| ||||| || ||| ||||||||||||||| ||| | |||||||
Sbjct 352545 CTGATGCCCGGACTCACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 352593
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263
|| ||||| ||||||||||| || |||||| ||| || | ||||| ||||| || ||
Sbjct 357407 GTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTGAAGAAACGCGGC 357348
Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312
|| ||||| || ||| ||||||||||||||| ||| | |||||||
Sbjct 357347 CTGATGCCCGGACTCACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 357299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620452381391440
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