Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1148 176 6e-39 seq1247 96.9 4e-15 seq1486 84.2 3e-11 >seq1148 Length=2189075 Score = 176 bits (194), Expect = 6e-39 Identities = 946/1493 (63%), Gaps = 44/1493 (3%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| | |||||||| ||| | || ||||| || | | ||| | | Sbjct 534503 CCCGCAGCACATGCTGATGCGGGTGGCGGTGGGCATCCACGGCGCGCGCGTGGATGCCGC 534444 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCT 111729 | ||||| ||| || | | || | | ||| |||| ||||| |||| || || | Sbjct 534443 CATTGAGACGTACAACCTGCTTTCA-GAGAGATGGTTCACGCACGCCTCACCCACTCTTT 534385 Query 111730 TCAACGCTGGTACACCAA--GACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 |||||||||| |||||| | || || ||||||| || ||||| | || | ||||| Sbjct 534384 TCAACGCTGG--CACCAACCGGCCACAGTTGTCCAGCTGCTTCCTGCTAGCCATGAAGGA 534327 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 || ||| ||||||| |||| ||| |||| | ||||||| ||||| || | ||| Sbjct 534326 CGACAGCATCGATGGCATCTACGACACGCTCAAGCAGTGTGCCCTCATCTCCAAATCGGC 534267 Query 111848 TGGTGGTATCGGGATG-----CACATCCATGATGTC-AGAGCCAACAAGTCTCGTATTAG 111901 ||||| ||||| || || | ||| || | | || | | ||| Sbjct 534266 AGGTGGCATCGGCGTGGCGGTCAGCTGCATCCGTTCCACTGGCAGCTACA-TCGCC---- 534212 Query 111902 AGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 111961 || || ||||| | || | || | | || ||||| || || | ||| ||| || Sbjct 534211 -GGCACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTGCGTGTCTACAACAACACGGC 534153 Query 111962 GCGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGA 112015 |||||| || |||| | || ||| | | || | |||| | || || || Sbjct 534152 GCGCTACGTGGACCAGGGAGGCAACAAGCGGCCC---GGCGCCTTCGCCATGTACCTGGA 534096 Query 112016 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075 ||| |||||| || ||| | || ||||| ||| || ||| ||| | ||||| Sbjct 534095 GCCGTGGCACTTTGACATCTTCGACTTCCTGGAGCTGAAGAAGAACACAGGCAAAGAGGA 534036 Query 112076 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 112135 | ||| ||| || || |||| || ||||||||| |||||||| ||||||||||| || Sbjct 534035 GCAGCGCGCCCGTGACCTGTTCTTCGGTCTCTGGATCCCAGATCTGTTCATGAAGAGGGT 533976 Query 112136 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TG 112194 ||| | | ||||| ||| | |||||| | || || || || ||| || Sbjct 533975 AGAGAGCAACCAGGACTGGTCGCTCATGTGTCCAAATGAGTGCCCTGGCCTGGACGAGTG 533916 Query 112195 CCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG 112254 | | |||||| |||||||| || | |||||| || ||| | || | |||| | Sbjct 533915 CTG-GGGTGATGAGTTTGAGGCTTTGTACACACGCTATGAGAAGGAGGGCCGGGTCAAGC 533857 Query 112255 CGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 112314 | |||| ||| | |||||| | || || || ||||||| || ||||| || | Sbjct 533856 GGGTGGTGAAAGCCCAGCAGGTGTGGTACGCCATCATCGAGTCTCAGACAGAGACGGGCA 533797 Query 112315 CACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 112374 | || || ||||| ||||| || || || || | ||||| || || |||| |||| Sbjct 533796 CGCCGTACATGCTCTACAAGGATGCATGCAATCGCAAGAGCAACCAGCAGAACCTGGGCA 533737 Query 112375 TGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 112434 |||||| | |||||| || || || ||| | |||| || | | || ||| || Sbjct 533736 CCATCAAGTGCAGCAACCTGTGCACGGAGATCGTCGAATACACCAGCCAGGACGAGGTGG 533677 Query 112435 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACAT 112494 | ||||| ||||| || || | || ||| || ||| || || ||| |||| Sbjct 533676 CCGTGTGCAACCTAGCCTCCGTGGCGCTCAACATGTACGTCACCCCCGAG---CGCACAT 533620 Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554 || | | || || | || || ||| || || ||||| ||||| | | Sbjct 533619 ACGACTTCAAGAAGCTGGCGGCCGTCACCAAAGTCATCGTCAAGAACCTCAACAGGATCA 533560 Query 112555 TTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 | || | || | ||||| || |||| || | || || ||| | ||||| | Sbjct 533559 TCGACATCAACTACTACCCGGTGCCTGAG---GCGCAGCGCTCCAACATGCGCCACCGGC 533503 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 112671 | ||||| |||| ||||| || || || || | |||||||| || || | |||| Sbjct 533502 CCATTGGCATCGGCGTCCAGGGGCTGGCCGACGCCTTCATTCTCATGCGGCAGCCCTTTG 533443 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 | | ||| ||| | | ||||| | || || ||||| | || ||||||| | Sbjct 533442 AGAGCCCCGAGGCGCAACTACTCAATATTCAGATCTTCGAGACTCTCTACTACGCCGCGC 533383 Query 112732 TTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 | ||||| || | ||| |||| | | | || || || || || | ||| |||| Sbjct 533382 TGGAGGCCAGCTGCGAGCTGGCCGCTGAGCACGGCCCCTACGAGACGTACCCGGGCTCTC 533323 Query 112792 CAGCTTCA-CAAGGGG-TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 112849 | | ||| ||||||| | || || | ||| |||||| | | ||| || | | Sbjct 533322 CTG--TCAGCAAGGGGATCCTCCAGTATGACATGTGGCAGCGGATTCCCACGCCGCTGTG 533265 Query 112850 CGACTGGGACGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 |||| |||| | |||||||| ||| || | ||| | | ||||| || || Sbjct 533264 GGACT-GGACATTACTCAAGGAGAAGATCGCCAAGCACGGTGTGAGAAACAGCCTGCTGC 533206 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 |||| || ||||| || |||||||| || || ||| | || || || || | | |||| Sbjct 533205 TGGCGCCCATGCCCACCGCCTCCACTGCGCAGATCCTTGGCAACAACGAGTCCATTGAGG 533146 Query 112969 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACA 113028 | ||||| | ||||| || | || ||| | || ||||| | |||||| Sbjct 533145 CGTACACCAGCAACATATACACACGCAGGGTGCTCTCCGGCGAGTTCCAGTGCGTCAACC 533086 Query 113029 AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 ||| || || | || |||| |||| || || ||| | |||| |||||| Sbjct 533085 CGCACCTACTGAAGGATCTCACTGAGAGGGGGCTATGGAGCGAGGACATGAAG 533033 >seq1247 Length=1231281 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 102177 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236 || |||||||| | || ||||| || ||||| ||||||||||| || |||||| | Sbjct 216485 GCCGAGCGACTTGTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 216426 Query 102237 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 102296 || || || ||| | ||||| |||| |||||||| || ||| || |||||||||||| Sbjct 216425 GCCATCTACTGGTTGAAGAAAAGAGGCCTCATGCCCGGCCTCACCTACTCCAACGAGCTC 216366 Query 102297 ATCTCTCGTGACGAGG 102312 ||| || ||||||| Sbjct 216365 ATCAGCCGGGACGAGG 216350 >seq1486 Length=661795 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||| || |||||| ||| || | ||||| ||||| || || Sbjct 352485 GTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTGAAGAAACGCGGC 352544 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || ||| ||||||||||||||| ||| | ||||||| Sbjct 352545 CTGATGCCCGGACTCACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 352593 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||| || |||||| ||| || | ||||| ||||| || || Sbjct 357407 GTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTGAAGAAACGCGGC 357348 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || ||| ||||||||||||||| ||| | ||||||| Sbjct 357347 CTGATGCCCGGACTCACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 357299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620452381391440