Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1148 136 5e-27 seq1247 93.3 5e-14 >seq1148 Length=2189075 Score = 136 bits (150), Expect = 5e-27 Identities = 547/849 (64%), Gaps = 43/849 (5%) Strand=Plus/Plus Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537 ||||| || ||| ||| |||| ||||| || | || || || |||| |||| Sbjct 533667 TTGCACACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTG 533726 Query 106538 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGC 106597 | ||| || || |||| |||| ||||| ||||| ||||| ||||||||||||||| Sbjct 533727 CACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGC 533786 Query 106598 ATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCT 106657 ||||| ||||| |||||||| ||||| |||| || || || | |||||| | |||| Sbjct 533787 ATGTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACACCTGCTGGGCT 533846 Query 106658 GGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCC 106717 || | ||| |||| |||||| ||| || |||||| | || |||||||| Sbjct 533847 TTCACCACCCGCTTGACCCGGCCCTCCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCA 533906 Query 106718 TCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACC 106776 |||||| | || ||| || || || || | |||||| | || ||||| | || Sbjct 533907 TCACCC-CAGCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCGACCA--GTCC 533963 Query 106777 ACCCT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 106834 | ||| |||| ||||||||| || ||||| ||||| || | || || || Sbjct 533964 TGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAACAGGTCA 534023 Query 106835 CTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATC 106893 | || ||| || | ||| ||| || | | ||| ||||| || | ||| || Sbjct 534024 CGGGCGCGCTGCTCCTCTTTGCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAAGATGTC 534082 Query 106894 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTT 106946 |||||| ||||| || || | |||| | || ||| | | | ||| | Sbjct 534083 AAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCTCCC----T 534138 Query 106947 GATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATT 107006 | | || |||||||| ||| ||| | || || ||||| || | | || | || | Sbjct 534139 GGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTGGAGT 534198 Query 107007 GACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA---CATC--ATGGATGTG--- 107058 ||||| || || | ||| || ||| || | | ||| | || Sbjct 534199 TGCCATTGGTGCC-------GGCGATGTA---GCTGCCAGTGGAACGGATGCAGCTGACC 534248 Query 107059 --CATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAG 107116 || || || || || ||| | || ||||| | ||||||| | | || || | ||| Sbjct 534249 GCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAG 534308 Query 107117 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC-- 107174 || || | ||| ||| ||||| |||| | |||||||| ||||||| ||| || | Sbjct 534309 ATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGG 534368 Query 107175 TTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCT 107234 |||||| ||||| ||||| || || |||| ||||| ||||| | | || | | Sbjct 534369 TTGGTG--CCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCA 534426 Query 107235 TGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCA 107294 || ||| ||||| | | | | ||| | | | ||||||||||| | ||||| |||| Sbjct 534427 GGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTGGATGCCCACCGCCACCCGCA 534486 Query 107295 TAAACATGT 107303 | | ||||| Sbjct 534487 TCAGCATGT 534495 >seq1247 Length=1231281 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| || ||| || || || || ||| || ||||| |||||||| || | |||| Sbjct 216350 CCTCGTCCCGGCTGATGAGCTCGTTGGAGTAGGTGAGGCCGGGCATGAGGCCTCTTTTCT 216409 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412 ||||||| || || ||| ||| || |||||||||||||| |||||||| ||||| | Sbjct 216410 TCAACCAGTAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACCGCTGCAAAAG 216469 Query 117413 CAAAAAGGCGCTCGGC 117428 | | ||| |||||||| Sbjct 216470 CCACAAGTCGCTCGGC 216485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589705153595480