Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1473 131 4e-25 >seq1473 Length=2736273 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| ||||| || ||||| || | || || | |||||||| Sbjct 2588166 ACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGACAGTGTGCGGCCATCTTCT 2588107 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||| | | || |||||||| ||||||||||| ||||| || Sbjct 2588106 AGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 2588047 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||||| |||||||||||||| ||| ||| || |||||||| | ||| Sbjct 2588046 ATTTTGGCTTTGACATTCTCAATGGTGTC---ACTGGGTTCAACCTCAAGGGTGATTGTC 2587990 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 2587989 TTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 2587958 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||| || || |||||||| || ||||| ||||| |||| || || | ||||| Sbjct 1453358 CAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATC 1453299 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| || || || || || || || | | |||||||| |||||||||||||||||||| Sbjct 1453298 TTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC 1453239 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || ||||| ||| || ||||||| ||||| | || || ||||| || || || Sbjct 1453238 CTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACGGT 1453179 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | || ||||| || | ||||| Sbjct 1453178 CTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1453146 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || ||||| || ||||| ||||| || || || ||||| || | || || Sbjct 2587950 CTGAGACGCAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGTGTA 2587891 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| || ||||| || || ||||| | | || |||||||| ||||||||| Sbjct 2587890 CGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCT 2587831 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || ||||| ||||| ||||| |||||||| ||| ||| || ||| Sbjct 2587830 TCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGTTCAACCTCA 2587774 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || ||||| | ||||| Sbjct 2587773 AGGGTTATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 2587730 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | || || | |||||||| Sbjct 1453810 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTCCGTCCATCTTCC 1453751 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | | |||||||| |||||||||||||||||||| ||| Sbjct 1453750 AGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGA 1453691 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| |||||||||| || || | || || ||||| || || ||||| Sbjct 1453690 ATTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAACCTCAAGAGTGACAGTCTTG 1453631 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 1453630 CCAGTTAGGGTCTTCACAAATATTTGCAT 1453602 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| || | ||||| | |||||||| Sbjct 1454038 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCC 1453979 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | | |||||||| |||||||||||||| ||||| || Sbjct 1453978 AGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 1453919 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCC---ACTTCAAGGGTAACCGTC 195108 ||||| ||| || ||||||| ||||| |||| || ||||||||||| | ||| Sbjct 1453918 ATTTTGGCCTTCACATTCTCAACAGTGTC---ACTTCCCTCAACTTCAAGGGTGATGGTC 1453862 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||| || || | ||||| Sbjct 1453861 TTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830 Score = 116 bits (128), Expect = 8e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || ||||||||||| || || ||||| || | || || Sbjct 1452455 TCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGT 1452396 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | ||| || || || ||||| | | ||| || || |||||||| || Sbjct 1452395 GCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACC 1452336 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || ||||| || || ||||||| ||||| | ||| || ||||| Sbjct 1452335 TTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAG 1452276 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATG 195145 ||| | ||||| || || | || || || || | |||||||| || Sbjct 1452275 GGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTTTG 1452229 Score = 116 bits (128), Expect = 8e-21 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || ||||| || || |||||||| || || || ||||| || | || || Sbjct 2587722 CTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTG 2587663 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| ||||||||||| || || || | | || |||||||| ||||||||| Sbjct 2587662 CGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCT 2587603 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || ||||| ||||| |||||||| ||||| ||| || || || Sbjct 2587602 TCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTC---ACTGGGCTCAACCTCG 2587546 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || || || | ||||| Sbjct 2587545 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 2587502 Score = 116 bits (128), Expect = 8e-21 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || ||||| || || |||||||| || || || ||||| || | ||||| Sbjct 2590181 CTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTG 2590240 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | || ||||| ||||||||||| || ||||| | | || ||||| || ||||||||| Sbjct 2590241 CGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCT 2590300 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || ||||| ||||| |||||||| ||||| ||| || || || Sbjct 2590301 TCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTC---ACTGGGCTCAACCTCG 2590357 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || || || | ||||| Sbjct 2590358 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 2590401 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||| || || |||||||| || || || ||||| || | || | | ||||| Sbjct 1453130 CAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGAGCGGCCATC 1453071 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| || || || || || || || | | |||||||| |||||||||||||||||||| Sbjct 1453070 TTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC 1453011 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || ||||| ||| || ||||||| ||||| | || || ||||| || || || Sbjct 1453010 CTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACGGT 1452951 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | || ||||| || | ||||| Sbjct 1452950 CTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452918 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 1452898 ACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCC 1452839 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | | || ||||| |||||||||||||||||||| ||| Sbjct 1452838 AGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGA 1452779 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCC---ACTTCAAGGGTAACCGTC 195108 ||||| |||||| || |||| ||||| ||| ||| || |||||||| | || Sbjct 1452778 ATTTTCACCTTGACATTTTCAACAGTGTC---ACTGTCCTCAACCTCAAGGGTGATGGTT 1452722 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || || || | ||||| Sbjct 1452721 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 1452690 Score = 111 bits (122), Expect = 3e-19 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||| || || |||||||| || || || ||||| || | || || | ||||| Sbjct 1453586 CAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 1453527 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||| || || || || || || | | |||||||| |||||||||||||||||||| Sbjct 1453526 TTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC 1453467 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCC---ACTTCAAGGGTAAC 195104 |||||||| ||| || || || | ||||| ||| ||| || || ||||| | Sbjct 1453466 CTGAATTTTGACCTTCACATTTTCCACAGTGTC---ACTGTCCTCAACCTCTAGGGTGAT 1453410 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || | || || || || | |||||| Sbjct 1453409 AGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 1453374 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || ||||||||||| || ||||| || | | || | |||||||| Sbjct 1454266 ACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGATAAGGTGCGTCCATCTTCT 1454207 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||||| || ||||| | | || || || || ||||||||||| ||||| || Sbjct 1454206 AATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 1454147 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || ||||||| ||||| | || || |||||||| | ||||| Sbjct 1454146 ATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTCGACCTCAAGGGTGATGGTCTTG 1454087 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || ||||| || | ||||| Sbjct 1454086 CCAGTGAGGGTCTTTACAAAGATCTGCAT 1454058 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||| |||| || |||||||| || || || |||||||| | || ||| ||||||| Sbjct 1454494 ACATGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTTTGGTCATCTTCC 1454435 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || |||| || || || || | | || |||||||| ||||||||||| |||||||| Sbjct 1454434 AGTGGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 1454375 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 |||| |||||| ||||||| ||||| | | || || |||||||| || | ||| Sbjct 1454374 ATTTGGGCCTTGACATTCTCAACAGTGTCACTAGTCTCGACCTCAAGGGTGACGGGCTTG 1454315 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 1454314 CCGGTAAGGGTCTTCACAAATATCTGCAT 1454286 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||| || || |||||||| || || || ||||| || | || || | ||||| Sbjct 1452674 CAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 1452615 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || || || ||||| || | | |||||||| || ||||||||||| |||| Sbjct 1452614 TTCCAATTGTTTGCCAGCGAATATCAACCTCTGTTGGTCAGGTGGAATGCCTTCCTTGTA 1452555 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || ||||| ||| | ||||||| || || | || || ||||| || || || Sbjct 1452554 CTGGATTTTGGCCTTCATATTCTCAACAGTATCACTCCCCTCAACCTCAAGAGTGACAGT 1452495 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || || | || ||||| || | |||||| Sbjct 1452494 CTTGCCAGTTAGGGTCTTTACAAAGATCTGCATT 1452461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108950277236159