Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1473 120 2e-22 >seq1473 Length=2736273 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| ||||| ||||| || |||||| Sbjct 1452880 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAAT 1452821 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||||| | || | || || ||||| ||| ||| ||||| | Sbjct 1452820 ATCAACCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGAATTTTCACCTTGACATTT 1452761 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | | | |||| | ||||||| || | ||| |||||||| || ||||| ||||||||| Sbjct 1452760 TCAACAGTGTCACTGTCCTCAACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACA 1452701 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1452700 AAGATCTGCAT 1452690 Score = 114 bits (126), Expect = 8e-21 Identities = 144/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| |||||||| || || ||||| Sbjct 2587692 TCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAA 2587633 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | || |||||||| || || |||||| || Sbjct 2587632 ATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGAC--AT 2587575 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| |||| ||| ||||| || || ||||| ||||||| Sbjct 2587574 TCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 2587515 Query 34969 CAAAGATCTGCATATT 34984 ||||||||||||| || Sbjct 2587514 CAAAGATCTGCATGTT 2587499 Score = 105 bits (116), Expect = 4e-18 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || | || |||||||| || || ||||| Sbjct 2590211 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAG 2590270 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||||| | || | || |||||||| || || |||||| || Sbjct 2590271 ATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGAC--AT 2590328 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| |||| ||| ||||| || || ||||| ||||||| Sbjct 2590329 TCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 2590388 Query 34969 CAAAGATCTGCATATT 34984 ||||||||||||| || Sbjct 2590389 CAAAGATCTGCATGTT 2590404 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| || || || || || ||||| Sbjct 2587920 TCCTTCTGGATGTTGTAGTCTGATAGTGTACGGCCATCTTCTAGTTGCTTGCCAGCAAAG 2587861 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | || |||||||| || || |||||| || Sbjct 2587860 ATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGAC--AT 2587803 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||||| || | ||||||||| || || ||||| ||||||| Sbjct 2587802 TCTCGATGGTGTCACTGGGTTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGGGTCTTCA 2587743 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 2587742 CGAAGATCTGCAT 2587730 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| |||| |||||| || ||||| Sbjct 1452424 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAG 1452365 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||| || | || | || |||||||| || || ||| || || Sbjct 1452364 ATCAACCTTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATTTTGGCTTTAAC--AT 1452307 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | | |||| | | ||||| || | ||| ||||| || || || || ||||||| Sbjct 1452306 TCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCA 1452247 Query 34969 CAAAGATCTGCATATT 34984 ||||||| ||||| || Sbjct 1452246 CAAAGATTTGCATTTT 1452231 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| || || ||||| || |||||| Sbjct 1453564 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAT 1453505 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | || ||||| | || | || || ||||| ||| || || || | Sbjct 1453504 ATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTT 1453445 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | | | |||| | ||||||| || | ||| || ||||| || ||||| ||||||||| Sbjct 1453444 TCCACAGTGTCACTGTCCTCAACCTCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACA 1453385 Query 34971 AAGATCTGCAT 34981 || || ||||| Sbjct 1453384 AATATTTGCAT 1453374 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGT-GCTTTCTTTCTGAATGTTATAGTCCGA 34813 || || ||||| | || || | |||| || |||| |||| || ||||| ||||| || Sbjct 1454740 CCACCTCTCAAACGCAGGACAAGATGAAGAGTAGCTTCCTTT-TGGATGTTGTAGTCAGA 1454682 Query 34814 AAGGCTTCGTTCATCATCC-AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | || ||| ||||| |||||||| || ||||| || || | || || | ||| Sbjct 1454681 GAGGGTGCGATCA-CATCCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGGCG 1454623 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | || |||||||| | || || |||||| || || | | |||| | |||| Sbjct 1454622 GAATACCTTCCTTGTCTTTGATTTTGGCTTTGAC--ATTCTCAACAGTATCACTGCCCTC 1454565 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || || || || || || || || ||||||||||||||||| Sbjct 1454564 GACCTCAAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 1454514 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| || || || ||| | || |||| || ||||| ||||| ||||| Sbjct 1454932 TCCTTTTGGATGTTGTAATCAGAGAGGGTACGGCCATCTTCTAGCTGCTTTCCAGCAAAG 1454873 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||| ||||| | || | || |||||||| || || ||||| || Sbjct 1454872 ATCAGCCTTTGTTGGTCAGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGAC--AT 1454815 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | | ||| ||| ||||| || | ||| ||||| || || ||||| ||||||| Sbjct 1454814 TCTCAACTGTATCATTGGCTTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 1454755 Query 34969 CAAAGATCTGCAT 34981 |||| | |||||| Sbjct 1454754 CAAACAACTGCAT 1454742 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| || || | || |||| || || || || || ||||| Sbjct 2588148 TCCTTTTGGATGTTGTAGTCTGACAGTGTGCGGCCATCTTCTAGTTGCTTGCCAGCAAAG 2588089 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | || |||||||| || || |||||| || Sbjct 2588088 ATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGAC--AT 2588031 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||||| || | ||| || || || || ||||| ||||||| Sbjct 2588030 TCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATTGTCTTGCCAGTGAGCGTCTTCA 2587971 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 2587970 CGAAGATCTGCAT 2587958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324485718946056