Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq28210 125 8e-24 seq10769 107 2e-18 >seq28210 Length=470 Score = 125 bits (138), Expect = 8e-24 Identities = 228/326 (70%), Gaps = 11/326 (3%) Strand=Plus/Minus Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG-TT 19317 ||||||||||||| || || || || ||||| || || ||| | | ||||| | | Sbjct 415 TTTCTGAATGAATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAAT 356 Query 19318 ATCTGTACTTCA-CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 || || || ||| |||||||| | || |||||||||| || || || |||||| || Sbjct 355 AT-TGGACCTCATTTACAAAAT-TCTCAGCCAAATTTTCGTTCACGATCCCATCAGATGC 298 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCATC--TGAGGTTAATGTA 19431 || ||||| || || | ||| || || |||| ||| ||||| |||| || || Sbjct 297 AGCGAAAAACGCCAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTT--GGTG 240 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 |||||||| || ||||| || |||| ||||| | ||||||||| ||||||| Sbjct 239 TTCCAATCCGAAAGATCTTGGTGTAGGTCTATCTCTTCTGCCGTCCAAAAACAAGCCTCA 180 Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551 |||||||||| | ||| | ||| | | ||| || ||||| || || |||| | | Sbjct 179 CATTTTTTATACCACTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCT 120 Query 19552 TTATTTTCTTTAAGAATAGGTTCCAT 19577 | ||||||| | |||||| ||||| Sbjct 119 TCGTTTTCTTGCAAAATAGGCTCCAT 94 >seq10769 Length=223 Score = 107 bits (118), Expect = 2e-18 Identities = 130/176 (74%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 18997 ATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATA 19056 ||||| || || ||||| || || || ||||||| ||| | |||||| |||||||| ||| Sbjct 214 ATCAACTCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAACCAGAAAATA 155 Query 19057 GAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCT 19116 ||| ||| | || |||||||| || || || || ||||||||||||| || | ||| Sbjct 154 GAACAAAAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATCAGGCGTTCA 95 Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172 || |||| | | ||| | ||||| || | |||||||| |||||||| || Sbjct 94 GCAAAACTTG-GTGATTCT-----ATCCACTTTAAGGCCCAATCTGCCTTCTTCTT 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561846175742280