Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 114 1e-19
seq809 105 5e-17
seq768 87.8 1e-11
>seq1473
Length=2736273
Score = 114 bits (126), Expect = 1e-19
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||||| || |||||||| ||||| |||||| || |||||||||| || || |
Sbjct 1455187 AGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGTGCGG 1455128
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|||||| | |||||| || ||||| || | || || |||||||| |||||||||||
Sbjct 1455127 CCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCCTTCC 1455068
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436
|| || || ||||| ||| || ||||| || ||| ||| | || |||||
Sbjct 1455067 TTGTCCTGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACCTCAAGAGTG 1455008
Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || ||||||||||| || || || ||||| |||||
Sbjct 1455007 ATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTGCAT 1454970
Score = 107 bits (118), Expect = 2e-17
Identities = 157/220 (71%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314
||||| || |||||||| ||||| ||| | ||| || ||||| |||| || || |
Sbjct 1453819 AGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGGGTCC 1453762
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
| |||||| |||||||| || ||||| || | || || || ||||||||||| ||||
Sbjct 1453761 GTCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTT 1453702
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434
|||| || |||||||| || || ||||| |||||| | | || ||||
Sbjct 1453701 CTTTGTCCTGAATTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAACCTCAAGAG 1453642
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| ||||| || ||||| || || || || || ||||||||
Sbjct 1453641 TGACAGTCTTGCCAGTTAGGGTCTTCACAAATATTTGCAT 1453602
Score = 98.7 bits (108), Expect = 8e-15
Identities = 155/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314
||||| || |||||||| ||||| ||| | | ||| || ||||| |||| || || |
Sbjct 1452907 AGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGG--ATGTTGTAGTCAGAGAGGGTGC 1452850
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
|||||| |||||||| || ||||| || | || ||||| ||||||||||| ||||
Sbjct 1452849 GGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCCTT 1452790
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434
|||| || |||||||| || || |||| || ||| ||| | || || |
Sbjct 1452789 CTTTGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAACCTCAAGGG 1452730
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| | ||||| ||||| || || || || || || |||||
Sbjct 1452729 TGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 1452690
Score = 95.1 bits (104), Expect = 1e-13
Identities = 156/223 (70%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311
|| ||||| || |||||||| ||||| ||| | | ||| || ||||| |||| || |
Sbjct 1452454 CTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGG--ATGTTGTAGTCAGAGAGGG 1452397
Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371
| | |||||| | ||||| || ||||| || | |||||||||||||||||||| |
Sbjct 1452396 TGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATAC 1452337
Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431
|||| || || || ||||| ||| || ||||| || ||| || | || |
Sbjct 1452336 CTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAA 1452277
Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || | || || ||||| || || || || || ||||||||
Sbjct 1452276 GGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCAT 1452234
Score = 91.5 bits (100), Expect = 1e-12
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||||| || |||||||| ||||| ||| || || ||||| |||| ||||| |
Sbjct 1454047 AGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGG 1453988
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|||||| |||||||| || ||||| || | || || || ||||||||||| |||||
Sbjct 1453987 CCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCC 1453928
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436
|| || || ||||| || || ||||| || ||| | | ||| || ||
Sbjct 1453927 TTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAACTTCAAGGGTG 1453868
Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || || |||||||| ||||| || || || |||||
Sbjct 1453867 ATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830
Score = 91.5 bits (100), Expect = 1e-12
Identities = 103/136 (76%), Gaps = 4/136 (3%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTA--CTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314
||||| || ||||||||||||||| || | ||||| || ||||| |||| || || |
Sbjct 1454275 AGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGG--ATGTTGTAGTCAGATAAGGTGC 1454218
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
| |||||| | ||| || || ||||| || | || ||||||||||| ||||| ||||
Sbjct 1454217 GTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCTT 1454158
Query 563375 CTTTATCTTGAATTTT 563390
| || || || |||||
Sbjct 1454157 CCTTGTCCTGGATTTT 1454142
Score = 89.7 bits (98), Expect = 4e-12
Identities = 153/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314
||||| | |||||||| ||||| ||| | ||| || ||||| |||| || || |
Sbjct 1453591 AGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGGGTGC 1453534
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
|||||| |||||||| || ||||| || | || || || ||||||||||| ||||
Sbjct 1453533 GGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTT 1453474
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434
|||| || |||||||| || || || | || ||| ||| | || || |
Sbjct 1453473 CTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAACCTCTAGGG 1453414
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| | |||||| ||||| || || || || || ||||||||
Sbjct 1453413 TGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 1453374
>seq809
Length=886213
Score = 105 bits (116), Expect = 5e-17
Identities = 105/135 (78%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || || || || || || || || ||||| || ||||| || ||||| |||||||
Sbjct 477249 ATGCTGTTATTACGGTGCCCGCCTACTTCAATGATTCCCAACGCCAGGCTACAAAAGATG 477190
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
| ||| || |||| || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct 477189 CAGGAACAATCTCTGGGCTCAATGTTCTGCGTATCATCAATGAACCAACTGCAGCTGCTA 477130
Query 550518 TTGCATATGGACTTG 550532
| |||||||| ||||
Sbjct 477129 TCGCATATGG-CTTG 477116
Score = 89.7 bits (98), Expect = 4e-12
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050
|||| | ||||| ||| | || ||||| || ||||||||||| | || |||| ||
Sbjct 478971 AGCTGTTGGTATTGATCTGGGGACCACCTACTCCTGTGTTGGTGTATTCCAGCATGGAAA 478912
Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110
||||||||| ||||| ||||| ||||| ||||| || || || |||||| | |||||
Sbjct 478911 AGTTGAAATCATTGCAAATGACCAAGGAAACAGGACCACACCTAGTTATGTGGCCTTCAC 478852
Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149
|| || || | | ||||||||||| || ||||
Sbjct 478851 AGACACCGAGAGGCTGATAGGTGATGCAGCCAAGAATCA 478813
>seq768
Length=2716662
Score = 87.8 bits (96), Expect = 1e-11
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
|| || || || || || |||||||| || ||||| ||||| |||||||||||| ||
Sbjct 1219583 ACCGTGCCGGCCTACTTCAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACCATC 1219642
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
| ||||| ||||| |||||||| ||||| || || || || || || | || |||||
Sbjct 1219643 TCCGGACTCAATGTCCTTCGTATCATCAACGAGCCCACCGCAGCAGCCATCGCTTATGGC 1219702
Query 550529 CTTGATAA 550536
|| || ||
Sbjct 1219703 CTGGACAA 1219710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4027319335669730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |