Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1473 114 1e-19 seq809 105 5e-17 seq768 87.8 1e-11 >seq1473 Length=2736273 Score = 114 bits (126), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || |||||||| ||||| |||||| || |||||||||| || || | Sbjct 1455187 AGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGTGCGG 1455128 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| | |||||| || ||||| || | || || |||||||| ||||||||||| Sbjct 1455127 CCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCCTTCC 1455068 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || || || ||||| ||| || ||||| || ||| ||| | || ||||| Sbjct 1455067 TTGTCCTGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACCTCAAGAGTG 1455008 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || ||||||||||| || || || ||||| ||||| Sbjct 1455007 ATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTGCAT 1454970 Score = 107 bits (118), Expect = 2e-17 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || |||||||| ||||| ||| | ||| || ||||| |||| || || | Sbjct 1453819 AGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGGGTCC 1453762 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | |||||| |||||||| || ||||| || | || || || ||||||||||| |||| Sbjct 1453761 GTCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTT 1453702 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 |||| || |||||||| || || ||||| |||||| | | || |||| Sbjct 1453701 CTTTGTCCTGAATTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAACCTCAAGAG 1453642 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||||| || ||||| || || || || || |||||||| Sbjct 1453641 TGACAGTCTTGCCAGTTAGGGTCTTCACAAATATTTGCAT 1453602 Score = 98.7 bits (108), Expect = 8e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || |||||||| ||||| ||| | | ||| || ||||| |||| || || | Sbjct 1452907 AGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGG--ATGTTGTAGTCAGAGAGGGTGC 1452850 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||| |||||||| || ||||| || | || ||||| ||||||||||| |||| Sbjct 1452849 GGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCCTT 1452790 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 |||| || |||||||| || || |||| || ||| ||| | || || | Sbjct 1452789 CTTTGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAACCTCAAGGG 1452730 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | ||||| ||||| || || || || || || ||||| Sbjct 1452729 TGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 1452690 Score = 95.1 bits (104), Expect = 1e-13 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || ||||| || |||||||| ||||| ||| | | ||| || ||||| |||| || | Sbjct 1452454 CTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGG--ATGTTGTAGTCAGAGAGGG 1452397 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| | ||||| || ||||| || | |||||||||||||||||||| | Sbjct 1452396 TGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATAC 1452337 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431 |||| || || || ||||| ||| || ||||| || ||| || | || | Sbjct 1452336 CTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAA 1452277 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | || || ||||| || || || || || |||||||| Sbjct 1452276 GGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCAT 1452234 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || |||||||| ||||| ||| || || ||||| |||| ||||| | Sbjct 1454047 AGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGG 1453988 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| |||||||| || ||||| || | || || || ||||||||||| ||||| Sbjct 1453987 CCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCC 1453928 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || || || ||||| || || ||||| || ||| | | ||| || || Sbjct 1453927 TTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAACTTCAAGGGTG 1453868 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || |||||||| ||||| || || || ||||| Sbjct 1453867 ATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830 Score = 91.5 bits (100), Expect = 1e-12 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTA--CTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || ||||||||||||||| || | ||||| || ||||| |||| || || | Sbjct 1454275 AGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGG--ATGTTGTAGTCAGATAAGGTGC 1454218 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | |||||| | ||| || || ||||| || | || ||||||||||| ||||| |||| Sbjct 1454217 GTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCTT 1454158 Query 563375 CTTTATCTTGAATTTT 563390 | || || || ||||| Sbjct 1454157 CCTTGTCCTGGATTTT 1454142 Score = 89.7 bits (98), Expect = 4e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| | |||||||| ||||| ||| | ||| || ||||| |||| || || | Sbjct 1453591 AGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGGGTGC 1453534 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||| |||||||| || ||||| || | || || || ||||||||||| |||| Sbjct 1453533 GGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTT 1453474 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 |||| || |||||||| || || || | || ||| ||| | || || | Sbjct 1453473 CTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAACCTCTAGGG 1453414 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | |||||| ||||| || || || || || |||||||| Sbjct 1453413 TGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 1453374 >seq809 Length=886213 Score = 105 bits (116), Expect = 5e-17 Identities = 105/135 (78%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || || || || || || ||||| || ||||| || ||||| ||||||| Sbjct 477249 ATGCTGTTATTACGGTGCCCGCCTACTTCAATGATTCCCAACGCCAGGCTACAAAAGATG 477190 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | ||| || |||| || |||||||| ||||| ||||||||||| ||||| ||||| Sbjct 477189 CAGGAACAATCTCTGGGCTCAATGTTCTGCGTATCATCAATGAACCAACTGCAGCTGCTA 477130 Query 550518 TTGCATATGGACTTG 550532 | |||||||| |||| Sbjct 477129 TCGCATATGG-CTTG 477116 Score = 89.7 bits (98), Expect = 4e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||| | || ||||| || ||||||||||| | || |||| || Sbjct 478971 AGCTGTTGGTATTGATCTGGGGACCACCTACTCCTGTGTTGGTGTATTCCAGCATGGAAA 478912 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||| ||||| ||||| ||||| ||||| || || || |||||| | ||||| Sbjct 478911 AGTTGAAATCATTGCAAATGACCAAGGAAACAGGACCACACCTAGTTATGTGGCCTTCAC 478852 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || || || | | ||||||||||| || |||| Sbjct 478851 AGACACCGAGAGGCTGATAGGTGATGCAGCCAAGAATCA 478813 >seq768 Length=2716662 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || |||||||| || ||||| ||||| |||||||||||| || Sbjct 1219583 ACCGTGCCGGCCTACTTCAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACCATC 1219642 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 | ||||| ||||| |||||||| ||||| || || || || || || | || ||||| Sbjct 1219643 TCCGGACTCAATGTCCTTCGTATCATCAACGAGCCCACCGCAGCAGCCATCGCTTATGGC 1219702 Query 550529 CTTGATAA 550536 || || || Sbjct 1219703 CTGGACAA 1219710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027319335669730