Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq696 205 8e-48
>seq696
Length=192186
Score = 205 bits (226), Expect = 8e-48
Identities = 185/233 (79%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859
|||| |||||||| ||| | ||||||||||| ||||| |||| |||||||| || ||
Sbjct 54117 TTCAACGGTTCCATGTGGTTGAGGTAGACGTGCGCGTCGCCCAACGTGTGGACGAAGTCG 54176
Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29919
||||| | || || |||| ||| || ||||||||||||||||| | |||||||||||||
Sbjct 54177 CCCGGCTGGAGTCCCGTGATGTGCGCGATCATGTACGTGAGGAGGGCGTAGCTGGCGATG 54236
Query 29920 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 29979
|| || || || || || ||||| || || || | |||||| ||||| || || |||||
Sbjct 54237 TTGAAAGGCACGCCCAGGCCCATATCGCCAGAGCGCTGGTACAGCTGGCAGGACAGCTCG 54296
Query 29980 CCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||||| |||||| ||||| |||| || ||||| ||||| || ||||| ||
Sbjct 54297 CCGTCGCACACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGCGCCATCAG 54349
Score = 113 bits (124), Expect = 4e-20
Identities = 134/179 (75%), Gaps = 7/179 (4%)
Strand=Plus/Plus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
|||||| ||||||||||| || || || | ||||||||| || ||||| || ||||||||
Sbjct 54894 CATGTCGGTGTACTCTGCACCAAAGTGGCGCCACTGGAAGCCATACACGGGACCCAGGTC 54953
Query 30210 TCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30266
|| || || | |||| |||||| | |||||||| ||| | || ||||| ||
Sbjct 54954 GCCTTCCTCAC---GCTCGGTGAAGCCGCACTTGTCCAGGAAGCTGCGCGAGCCGTTAGC 55010
Query 30267 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 30325
|||| ||||| || || ||||| || ||||| ||||| || || ||||| ||| |||
Sbjct 55011 AGCCCAAATCTTCACGCCTTTCTCCGACAGCTCCTTGGAATTCGTCGACCC-CTGTCGA 55068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408431461530821
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |