Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq696 205 8e-48 >seq696 Length=192186 Score = 205 bits (226), Expect = 8e-48 Identities = 185/233 (79%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859 |||| |||||||| ||| | ||||||||||| ||||| |||| |||||||| || || Sbjct 54117 TTCAACGGTTCCATGTGGTTGAGGTAGACGTGCGCGTCGCCCAACGTGTGGACGAAGTCG 54176 Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29919 ||||| | || || |||| ||| || ||||||||||||||||| | ||||||||||||| Sbjct 54177 CCCGGCTGGAGTCCCGTGATGTGCGCGATCATGTACGTGAGGAGGGCGTAGCTGGCGATG 54236 Query 29920 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 29979 || || || || || || ||||| || || || | |||||| ||||| || || ||||| Sbjct 54237 TTGAAAGGCACGCCCAGGCCCATATCGCCAGAGCGCTGGTACAGCTGGCAGGACAGCTCG 54296 Query 29980 CCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||||| |||||| ||||| |||| || ||||| ||||| || ||||| || Sbjct 54297 CCGTCGCACACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGCGCCATCAG 54349 Score = 113 bits (124), Expect = 4e-20 Identities = 134/179 (75%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| ||||||||||| || || || | ||||||||| || ||||| || |||||||| Sbjct 54894 CATGTCGGTGTACTCTGCACCAAAGTGGCGCCACTGGAAGCCATACACGGGACCCAGGTC 54953 Query 30210 TCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30266 || || || | |||| |||||| | |||||||| ||| | || ||||| || Sbjct 54954 GCCTTCCTCAC---GCTCGGTGAAGCCGCACTTGTCCAGGAAGCTGCGCGAGCCGTTAGC 55010 Query 30267 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 30325 |||| ||||| || || ||||| || ||||| ||||| || || ||||| ||| ||| Sbjct 55011 AGCCCAAATCTTCACGCCTTTCTCCGACAGCTCCTTGGAATTCGTCGACCC-CTGTCGA 55068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408431461530821