Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1148 475 6e-129 seq3718 215 1e-50 seq1197 187 5e-42 seq1490 158 2e-33 seq1249 143 5e-29 seq1486 107 4e-18 seq1247 107 4e-18 seq1192 107 4e-18 >seq1148 Length=2189075 Score = 475 bits (526), Expect = 6e-129 Identities = 1054/1560 (68%), Gaps = 46/1560 (3%) Strand=Plus/Plus Query 212858 CATGTCCTCGTTCCAGAGGCCCCTGGTCTCC---AGGCACTTGACCAGGTGAGGGTTGAC 212914 |||||||||| |||| || ||||| ||| || ||| | ||||| |||||||| Sbjct 533036 CATGTCCTCGCTCCATAGCCCCCT---CTCAGTGAGATCCTTCAGTAGGTGCGGGTTGAC 533092 Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 |||||| || || ||||||||||| | ||| | ||| ||||| | ||| || Sbjct 533093 GCACTGGAACTCGCCGGAGAGCACCCTGCGTGTGTATATGTTGCTGGTGTACGCCTCAAT 533152 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | ||||||||| || || ||||| |||||| ||| ||||||||||| |||| ||| || Sbjct 533153 GGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAG 533212 Query 213035 ACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCC 213094 ||||| ||||| ||||||| | |||| | || || ||||||||| | Sbjct 533213 GCTGTTTCTCACACCGTGCTTGGCGATCTTCTCCTTGAGTAATGTCCAGTCCCA-----C 533267 Query 213095 AGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGG 213154 || | | | | | | | | |||||||||| |||| | ||| || ||||| || || Sbjct 533268 AGC---GGCGTGGGAATCCGC-TGCCACATGTCATACTGGAGGATCCCCTTGCTGACAGG 533323 Query 213155 GCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAG 213214 |||| |||| | ||||||||| ||||| ||||||||||||| |||| ||| Sbjct 533324 AGAGCCCGGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAG 533383 Query 213215 GGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG-GCCTCTGGGGACG 213273 || |||||||||| || || || |||| | ||||| | ||| ||||| ||| | Sbjct 533384 CGCGGCGTAGTAGAGAGTCTCGAAGATCTGAATATTGAG-TAGTTGCGCCTCGGGGCTCT 533442 Query 213274 TGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGG 213333 |||||| | |||| | ||| | || |||||||||||||| |||||||| |||| Sbjct 533443 CAAAGGGCTGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGG 533502 Query 213334 GTCTGTGTCTCAGGTTAGA-CTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATG 213392 | | ||| | || ||| || | | || ||| || ||||| ||||| ||||||| Sbjct 533503 GCCGGTGGCGCATGTTGGAGCGCTGCGC-CTCAGGCACCGGGTAGTAGTTGATGTCGATG 533561 Query 213393 ATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAAC 213452 ||| |||||||||| | | ||||||||||| ||||| | || |||| Sbjct 533562 ATCCTGTTGAGGTTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCT------TGAAG 533615 Query 213453 ACGTA---GCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACG 213509 |||| || | || || || || || | | ||| |||||||| ||| Sbjct 533616 TCGTATGTGCGCTCGGGGGTGACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACG 533675 Query 213510 GCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATG 213569 |||||||| | | ||||| || | |||||| ||||||||||||||||| |||| Sbjct 533676 GCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATG 533735 Query 213570 GTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGG 213628 |||||||||||||| ||||| ||| ||| | ||| | |||||||||||||||||| || Sbjct 533736 GTGCCCAGGTTCTGCTGGTTGCTCTT-GCGATTGCATGCATCCTTGTAGAGCATGTACGG 533794 Query 213629 GGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCAC 213688 | || |||||| ||| ||| | | || | ||| | | | ||| || ||||| Sbjct 533795 CGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACCAC 533854 Query 213689 CCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGC 213747 |||| |||| |||| | | ||| || || ||| | | | || || | | Sbjct 533855 CCGCTTGAC----CCGGCCCTCCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCAC 533910 Query 213748 CCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCA- 213806 ||||| | |||||| || || || ||||||||||| ||||||| || Sbjct 533911 CCCAGCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGC 533970 Query 213807 TCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTC 213866 ||||| || |||| ||||||||| || |||| ||| || || ||||||||| | || Sbjct 533971 TCTCT-ACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCG 534029 Query 213867 CTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGC 213926 | | ||| || || | ||| || ||| || || ||||| |||||||| |||| Sbjct 534030 CGCTGCTCCTCTTTGCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGC 534089 Query 213927 CACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTCCACCAGC 213983 |||||||||| ||| ||||| |||||||| |||| | ||||| ||||||||||| Sbjct 534090 CACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAG 534149 Query 213984 CTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTT 214043 | ||| ||||| ||| ||||| | ||| ||||| |||||||| | || ||||| Sbjct 534150 CGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTG 534209 Query 214044 CCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCG 214103 || || || || ||| | || | | | ||| | | | || |||||||| || Sbjct 534210 CCGGCGATGTAGCTGCCAGTGGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCC 534269 Query 214104 TACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCT 214163 | |||||||| | ||| || || | | || || |||||| | |||||||| || Sbjct 534270 GATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCC 534329 Query 214164 GTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGC 214223 | | | |||| ||||||||| || | ||| |||| | | ||||| ||||||||| Sbjct 534330 TTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGA 534389 Query 214224 GTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAG 214283 ||||| ||| || | | | | | || || || |||| ||||| | | | | Sbjct 534390 GTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCA 534449 Query 214284 GGGATGTCGTGC-TTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTC 214342 | | || || |||||| | || || ||||||||||||||| || | ||| Sbjct 534450 TCCACG-CGCGCGCCGTGGATGCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTC 534508 Query 214343 TATGGGTCCTT--TGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAG 214400 || |||| | | ||||||||| |||||||||||||| |||||||| |||||| Sbjct 534509 --TGCCACCTTGCCGTTGATCTTGAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAG 534566 >seq3718 Length=3117880 Score = 215 bits (238), Expect = 1e-50 Identities = 191/239 (80%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||||||||| || || ||| ||| |||| ||||||||| |||||||||||||||| Sbjct 2730467 GCTGACAGCCGCTGCTCACGTGGGTCAGAACCTTCTGTTTGAGCTGGGCCACCTGGTCCC 2730526 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || || || || || |||||||| || |||||||| ||| || | ||||| |||| Sbjct 2730527 GGAGCACCGATGCTGTGTTGGACAGGCCCGCGTTGTCGCTCTTCAGACCTTTCACCTTCT 2730586 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 ||||||| || |||||||| |||||||||||||| ||||| ||||| || |||| |||| Sbjct 2730587 CCTCCAGACGAGCGATGCGCTCCAGTTTGCGCCGCCGGCACTTGGTCGCCGCCAGTCGGT 2730646 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||| || ||||| || ||||||||||| | |||||| ||||| |||||| |||||| Sbjct 2730647 TCCTCAGCCTCTTGCGCTCCGCCTTGATCCTCTCCTGGGTCTCCAGGTCGATAGGAGAC 2730705 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| ||||||| || || || || || |||||||| ||||||| Sbjct 2730500 TCTGTTTGAGCTGGGCCACCTGGTCCCGGAGCACCGATGCTGTGTTGGACAGGCCCGCGT 2730559 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || ||| || | ||||||||||| || |||||||| ||||| || Sbjct 2730560 TGTCGCTCTTCAGACCTTTCACCTTCTCCTCCAGACGAGCGATGCGCTCCAGTTT 2730614 >seq1197 Length=5832386 Score = 187 bits (206), Expect = 5e-42 Identities = 190/246 (77%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTC 241446 |||||||||| || ||||||| || | || | ||||||||||||||||||||| || Sbjct 938062 GCTGACAGCCGCTGCTCACATGTGTCATA--ACTTTCTGTTTGAGTTGGGCCACCTGCTC 938119 Query 241447 CCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTT 241506 ||| || | ||| || || |||||||| || |||||||| | || || ||||||||| | Sbjct 938120 CCGTAGGAGGGAGGCCGTGTTGGACAGCCCCGCGTTGTCCGTTTTCAGAACCTTCACTCT 938179 Query 241507 CTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCG 241566 ||||||| || || ||||| ||||| || ||||| || || |||| || |||| || Sbjct 938180 GTCCTCCAAACGGGCAATGCGCTCCAGCTTACGCCGCCGACACTTGGACGCGGCCAGCCG 938239 Query 241567 GTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| ||| | ||| || ||||||||||| || ||||| | ||||| ||| || || || Sbjct 938240 GTTCCTGAGCCGCTTGCGCTCCGCCTTGATTCGCTCCTGATTCTCCAGGTCTATGGGGGA 938299 Query 241627 CTTGGG 241632 | |||| Sbjct 938300 CATGGG 938305 >seq1490 Length=8484970 Score = 158 bits (174), Expect = 2e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 241418 ACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCT 241477 |||| ||| |||||||| |||||||| |||||||| | | |||||| | |||| | Sbjct 4622840 ACCTTCTGCTTGAGTTGCGCCACCTGCTCCCGCAGCATGTTGGCGGTAGACGCCAGTTCC 4622899 Query 241478 GCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTG 241537 | ||| | |||||||| ||||||||| ||||||||||||| |||||||||||| || Sbjct 4622900 GAGTTTTGCGACTTGAGGGTCTTCACTTTGTCCTCCAGCCGCGAGATGCGTTCCAGCTTC 4622959 Query 241538 CGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATG 241597 | | |||||| |||| ||| || | |||||| || | | ||| || || ||||||||| Sbjct 4622960 CTCTTGCGGCACTTGGAGGCAGCAATGCGGTTGCGCATGCGCTTGCGCTCGGCCTTGATG 4623019 Query 241598 CGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || || ||| ||||||||| || || ||| Sbjct 4623020 CGCTCTTGGCTCTCCATGTCAATGGGGGAC 4623049 Score = 105 bits (116), Expect = 1e-17 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 38960 CACCAGCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGT 39019 ||||| ||||| | ||||||||||||||| || || || | |||||| |||||||| | Sbjct 6342597 CACCATTTCCCAACGGTTGGCGGAGAAGAGAAGATGCACCGTGTGGTCCTCCAGCTCGCT 6342656 Query 39020 CTTACTCTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070 ||| |||||||||||| || |||| ||||||||| || ||| ||||||| Sbjct 6342657 CTTCTTCTCCAGGTACGCACTTATCAGCTTTCCGATTGTTGTGCTTCTGTC 6342707 >seq1249 Length=301176 Score = 143 bits (158), Expect = 5e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 241390 CTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCG 241449 ||| ||||| | | | ||| | || ||||| ||||||||| || | ||||| ||||| Sbjct 208934 CTGGCAGCCGTTGGTGACGTGACTCATGACCTTCTGTTTGAGCTGAGAGACCTGCTCCCG 208993 Query 241450 CAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTC 241509 ||| | ||| ||||| || ||| | | ||| | | ||| || | |||||| ||||| Sbjct 208994 CAGCATGGAAGCGGTGGAGGCCAGGTCCGAGTTCTGACTCTTCAGGATCTTCACCTTCTC 209053 Query 241510 CTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTT 241569 |||||| |||| ||| || |||||||||||| ||||||||||| ||| || | |||||| Sbjct 209054 CTCCAGTCGCGAGATTCGCTCCAGTTTGCGCTTGCGGCATTTGGAGGCGGCGATGCGGTT 209113 Query 241570 CCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || || |||| || || || ||||| | || || ||||| |||||| || || Sbjct 209114 GCGCAGCTTCTTGCGCTCGGCTTTGATCCTCTCTTGCGTCTCCAGGTCGATGGGGGA 209170 >seq1486 Length=661795 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | |||||||||| ||||||||||| ||| || ||||| | || | | || Sbjct 352591 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCTTC 352532 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || || ||||| ||||| |||||||||||||||||||| || ||||| || Sbjct 352531 AGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAGC 352473 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | |||||||||| ||||||||||| ||| || ||||| | || | | || Sbjct 357301 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCTTC 357360 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || || ||||| ||||| |||||||||||||||||||| || ||||| || Sbjct 357361 AGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAGC 357419 >seq1247 Length=1231281 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 |||||||||||||||||| |||||||| || ||| || ||||||| || || | || Sbjct 216352 TCGTCCCGGCTGATGAGCTCGTTGGAGTAGGTGAGGCCGGGCATGAGGCCTCTTTTCTTC 216411 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 | |||| | || || ||||| ||||| |||||||||||||||||||| || || || || Sbjct 216412 AACCAGTAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACCGCTGCAAAAGC 216470 >seq1192 Length=727434 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 241418 ACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCT 241477 |||| ||| ||||| || |||||||| ||||| || ||| || || | ||| | Sbjct 469615 ACCTTCTGCTTGAGCTGAGCCACCTGCTCCCGGAGCACGCTGGCCGTGGACGCCAGCTCG 469556 Query 241478 GCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTG 241537 | ||| | | ||| || |||||| || ||||||||||| | ||| | |||||||| Sbjct 469555 GTGTTCTGCGTCTTCAGGCTCTTCACCTTGTCCTCCAGCCGAGAGATCCTCTCCAGTTTC 469496 Query 241538 CGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATG 241597 | | |||||| |||| ||| || | ||||| || || | || | |||||||| || Sbjct 469495 CTCTTGCGGCACTTGGAGGCAGCTATCCGGTTGCGCAGCTTTTTCCTCTCCGCCTTAATT 469436 Query 241598 CGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || ||||||| |||||||| ||||| || Sbjct 469435 CGCTCCTGGTTGTCCATGTCAATCGGGGA 469407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931097576231680