Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 336 4e-87
seq1486 114 2e-20
seq1247 111 3e-19
>seq1148
Length=2189075
Score = 336 bits (372), Expect = 4e-87
Identities = 761/1131 (67%), Gaps = 30/1131 (3%)
Strand=Plus/Plus
Query 221371 GTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGCAGCGT 221429
||||| ||||||||| |||| | ||||| | |||| | || || || || ||||
Sbjct 533333 GTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCA-GCTGGCCTCCAGCGCGGCGT 533391
Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489
||||| ||||| |||||| | |||||| | |||||||| ||||||
Sbjct 533392 AGTAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCT 533451
Query 221490 TACGCAGCATCTGAAAGA---CGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGT 221546
|| |||| ||| || |||||||||| ||||| || ||||| || ||||||| ||
Sbjct 533452 ---GCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGT 533508
Query 221547 GTCTCCTGTTGGAA-GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTG 221605
| | | ||||||| || || || || ||||| || || |||||| |||||| | ||
Sbjct 533509 GGCGCATGTTGGAGCGCTGC-GCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTG 533567
Query 221606 TTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAAC 221665
||||||||| ||||||||| || | | |||||||| |||| | |
Sbjct 533568 TTGAGGTTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCT------TGAAGTCGTAT 533621
Query 221666 TCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725
|| || ||| ||||| | | | | || || || ||| ||| ||||| |||
Sbjct 533622 GTGC-GC--TCG----GGGGTGACGTACATG--TTGAGCGCCACGGAGGCTAGGTTGCAC 533672
Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785
|||||||||||||||| | |||| || | | |||||| || || |||||||||||||||
Sbjct 533673 ACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTGCACTTG 533732
Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAG 221845
||||| ||||||| | || || |||||||||| || |||||||||||||| |
Sbjct 533733 ATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTAC 533792
Query 221846 GGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACC 221905
|| ||| ||||| ||||| | | | || || ||| | | ||| |||||
Sbjct 533793 GGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACC 533852
Query 221906 GTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCA 221965
|| |||||| ||||| ||| ||||| | || || | ||||||| |||
Sbjct 533853 ACCCGCTTGACCCGGCCCTC---CTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCA 533909
Query 221966 CCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTG 222025
|| | |||||||||||| || ||| |||||||| || ||||| || ||||
Sbjct 533910 CCCCAGCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTG 533969
Query 222026 -TCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGT 222084
||| | ||||||| |||||| || || |||||||| || | || || || | ||
Sbjct 533970 CTCTCT-ACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGC 534028
Query 222085 CCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTG 222144
||||||||||| ||| |||| ||| |||| |||| || || || |||||| |||
Sbjct 534029 GCGCTGCTCCTCTTTGCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTG 534088
Query 222145 CCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCAT 222204
|||||||||||| || | ||| | |||||||| ||||||||||| ||||| |||||
Sbjct 534089 CCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTA 534148
Query 222205 CCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGT 222264
| | || |||| ||| || || | || ||||| |||||||| || |||||
Sbjct 534149 GCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGT 534208
Query 222265 GCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGC 222324
||| ||||| || || | | | ||| | | || |||||| ||||| ||
Sbjct 534209 GCCGGCGATGTAGCTGCCAGTGGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGC 534268
Query 222325 GTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTC 222384
||| ||||| | ||| || |||||| ||||| |||||| || || ||| ||
Sbjct 534269 CGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTC 534328
Query 222385 CTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAG 222444
||| | | ||||| || || |||| ||| | | ||| | ||||| || ||
Sbjct 534329 CTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAG 534388
Query 222445 CGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495
||||| |||||| || || | | | || | ||| | |||||||||
Sbjct 534389 AGTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCAGGTTGTACGTCTC 534439
Score = 113 bits (124), Expect = 8e-20
Identities = 160/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 221030 TGTACAGAGCCCTTGTTGACCAAA-AGCTCGGTACGCATCTCGTCCGTCCATAGACCCCT 221088
||||| || || |||| || ||| |||| | | ||| || || ||||||| |||||
Sbjct 533001 TGTACGGATCCATTGT-GAGCAATTAGCTGGTTCTTCATGTCCTCGCTCCATAGCCCCCT 533059
Query 221089 CTCTTCCAGCACCTTGACCATGTGCTTGTTCAC-CACTTGGAAATCTCCCGAGAGCACCC 221147
||| || |||| | | |||| ||| || |||| |||| || || ||||||||||
Sbjct 533060 CTCAGTGAGATCCTTCAGTAGGTGCGGGTTGACGCACT-GGAACTCGCCGGAGAGCACCC 533118
Query 221148 TCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAG 221207
| | ||| | ||| ||| ||| || ||| |||||||||||| |||||||| |
Sbjct 533119 TGCGTGTGTATATGTTGCTGGTGTACGCCTCAATGGACTCGTTGTTGCCAAGGATCTGCG 533178
Query 221208 CCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTT 221247
| ||| ||||||||||||||| |||| |||||| |||||
Sbjct 533179 CAGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCTGTT 533218
>seq1486
Length=661795
Score = 114 bits (126), Expect = 2e-20
Identities = 109/137 (80%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932
|||||||| |||| || || || || |||||||||||||| ||| ||| || || ||
Sbjct 352458 GGCGAGCGCGTGGTGGCTTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 352517
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991
|||||||||||||| ||| | | | || | |||||||| || ||| |||||||||||
Sbjct 352518 GCCATCTTCTGGCTGAAG-AAACGCGGCCTGATGCCCGGACTCACCTTCTCCAACGAGCT 352576
Query 25992 CATCAGCAGGGACGAGG 26008
||||||||| |||||||
Sbjct 352577 CATCAGCAGAGACGAGG 352593
Score = 114 bits (126), Expect = 2e-20
Identities = 109/137 (80%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932
|||||||| |||| || || || || |||||||||||||| ||| ||| || || ||
Sbjct 357434 GGCGAGCGCGTGGTGGCTTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 357375
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCT 25991
|||||||||||||| ||| | | | || | |||||||| || ||| |||||||||||
Sbjct 357374 GCCATCTTCTGGCTGAAGAA-ACGCGGCCTGATGCCCGGACTCACCTTCTCCAACGAGCT 357316
Query 25992 CATCAGCAGGGACGAGG 26008
||||||||| |||||||
Sbjct 357315 CATCAGCAGAGACGAGG 357299
Score = 86.0 bits (94), Expect = 1e-11
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304
|||||||||||||| ||||| ||||| ||| |||| || |||||||||||||| || |||
Sbjct 353232 AACCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAGAAG 353291
Query 26305 AGGGTCGGCGACTATCA 26321
| |||||||| || ||
Sbjct 353292 CGCGTCGGCGAGTACCA 353308
Score = 86.0 bits (94), Expect = 1e-11
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304
|||||||||||||| ||||| ||||| ||| |||| || |||||||||||||| || |||
Sbjct 356657 AACCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAGAAG 356598
Query 26305 AGGGTCGGCGACTATCA 26321
| |||||||| || ||
Sbjct 356597 CGCGTCGGCGAGTACCA 356581
>seq1247
Length=1231281
Score = 111 bits (122), Expect = 3e-19
Identities = 107/135 (79%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934
|||||| || || || ||||| || |||||||||||||| ||| ||| || || || ||
Sbjct 216483 CGAGCGACTTGTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGC 216424
Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993
||||| |||| | ||| | ||| || | ||||||||| || || |||||||||||||
Sbjct 216423 CATCTACTGGTTGAAGAA-AAGAGGCCTCATGCCCGGCCTCACCTACTCCAACGAGCTCA 216365
Query 25994 TCAGCAGGGACGAGG 26008
||||| |||||||||
Sbjct 216364 TCAGCCGGGACGAGG 216350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928410832098880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |