Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1148 336 4e-87 seq1486 114 2e-20 seq1247 111 3e-19 >seq1148 Length=2189075 Score = 336 bits (372), Expect = 4e-87 Identities = 761/1131 (67%), Gaps = 30/1131 (3%) Strand=Plus/Plus Query 221371 GTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGCAGCGT 221429 ||||| ||||||||| |||| | ||||| | |||| | || || || || |||| Sbjct 533333 GTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCA-GCTGGCCTCCAGCGCGGCGT 533391 Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489 ||||| ||||| |||||| | |||||| | |||||||| |||||| Sbjct 533392 AGTAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCT 533451 Query 221490 TACGCAGCATCTGAAAGA---CGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGT 221546 || |||| ||| || |||||||||| ||||| || ||||| || ||||||| || Sbjct 533452 ---GCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGT 533508 Query 221547 GTCTCCTGTTGGAA-GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTG 221605 | | | ||||||| || || || || ||||| || || |||||| |||||| | || Sbjct 533509 GGCGCATGTTGGAGCGCTGC-GCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTG 533567 Query 221606 TTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAAC 221665 ||||||||| ||||||||| || | | |||||||| |||| | | Sbjct 533568 TTGAGGTTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCT------TGAAGTCGTAT 533621 Query 221666 TCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725 || || ||| ||||| | | | | || || || ||| ||| ||||| ||| Sbjct 533622 GTGC-GC--TCG----GGGGTGACGTACATG--TTGAGCGCCACGGAGGCTAGGTTGCAC 533672 Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785 |||||||||||||||| | |||| || | | |||||| || || ||||||||||||||| Sbjct 533673 ACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTGCACTTG 533732 Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAG 221845 ||||| ||||||| | || || |||||||||| || |||||||||||||| | Sbjct 533733 ATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTAC 533792 Query 221846 GGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACC 221905 || ||| ||||| ||||| | | | || || ||| | | ||| ||||| Sbjct 533793 GGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACC 533852 Query 221906 GTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCA 221965 || |||||| ||||| ||| ||||| | || || | ||||||| ||| Sbjct 533853 ACCCGCTTGACCCGGCCCTC---CTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCA 533909 Query 221966 CCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTG 222025 || | |||||||||||| || ||| |||||||| || ||||| || |||| Sbjct 533910 CCCCAGCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTG 533969 Query 222026 -TCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGT 222084 ||| | ||||||| |||||| || || |||||||| || | || || || | || Sbjct 533970 CTCTCT-ACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGC 534028 Query 222085 CCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTG 222144 ||||||||||| ||| |||| ||| |||| |||| || || || |||||| ||| Sbjct 534029 GCGCTGCTCCTCTTTGCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTG 534088 Query 222145 CCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCAT 222204 |||||||||||| || | ||| | |||||||| ||||||||||| ||||| ||||| Sbjct 534089 CCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTA 534148 Query 222205 CCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGT 222264 | | || |||| ||| || || | || ||||| |||||||| || ||||| Sbjct 534149 GCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGT 534208 Query 222265 GCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGC 222324 ||| ||||| || || | | | ||| | | || |||||| ||||| || Sbjct 534209 GCCGGCGATGTAGCTGCCAGTGGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGC 534268 Query 222325 GTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTC 222384 ||| ||||| | ||| || |||||| ||||| |||||| || || ||| || Sbjct 534269 CGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTC 534328 Query 222385 CTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAG 222444 ||| | | ||||| || || |||| ||| | | ||| | ||||| || || Sbjct 534329 CTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAG 534388 Query 222445 CGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 ||||| |||||| || || | | | || | ||| | ||||||||| Sbjct 534389 AGTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCAGGTTGTACGTCTC 534439 Score = 113 bits (124), Expect = 8e-20 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 221030 TGTACAGAGCCCTTGTTGACCAAA-AGCTCGGTACGCATCTCGTCCGTCCATAGACCCCT 221088 ||||| || || |||| || ||| |||| | | ||| || || ||||||| ||||| Sbjct 533001 TGTACGGATCCATTGT-GAGCAATTAGCTGGTTCTTCATGTCCTCGCTCCATAGCCCCCT 533059 Query 221089 CTCTTCCAGCACCTTGACCATGTGCTTGTTCAC-CACTTGGAAATCTCCCGAGAGCACCC 221147 ||| || |||| | | |||| ||| || |||| |||| || || |||||||||| Sbjct 533060 CTCAGTGAGATCCTTCAGTAGGTGCGGGTTGACGCACT-GGAACTCGCCGGAGAGCACCC 533118 Query 221148 TCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAG 221207 | | ||| | ||| ||| ||| || ||| |||||||||||| |||||||| | Sbjct 533119 TGCGTGTGTATATGTTGCTGGTGTACGCCTCAATGGACTCGTTGTTGCCAAGGATCTGCG 533178 Query 221208 CCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTT 221247 | ||| ||||||||||||||| |||| |||||| ||||| Sbjct 533179 CAGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCTGTT 533218 >seq1486 Length=661795 Score = 114 bits (126), Expect = 2e-20 Identities = 109/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 |||||||| |||| || || || || |||||||||||||| ||| ||| || || || Sbjct 352458 GGCGAGCGCGTGGTGGCTTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 352517 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||||||||||||| ||| | | | || | |||||||| || ||| ||||||||||| Sbjct 352518 GCCATCTTCTGGCTGAAG-AAACGCGGCCTGATGCCCGGACTCACCTTCTCCAACGAGCT 352576 Query 25992 CATCAGCAGGGACGAGG 26008 ||||||||| ||||||| Sbjct 352577 CATCAGCAGAGACGAGG 352593 Score = 114 bits (126), Expect = 2e-20 Identities = 109/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 |||||||| |||| || || || || |||||||||||||| ||| ||| || || || Sbjct 357434 GGCGAGCGCGTGGTGGCTTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 357375 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||||||||||||| ||| | | | || | |||||||| || ||| ||||||||||| Sbjct 357374 GCCATCTTCTGGCTGAAGAA-ACGCGGCCTGATGCCCGGACTCACCTTCTCCAACGAGCT 357316 Query 25992 CATCAGCAGGGACGAGG 26008 ||||||||| ||||||| Sbjct 357315 CATCAGCAGAGACGAGG 357299 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| ||| |||| || |||||||||||||| || ||| Sbjct 353232 AACCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAGAAG 353291 Query 26305 AGGGTCGGCGACTATCA 26321 | |||||||| || || Sbjct 353292 CGCGTCGGCGAGTACCA 353308 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| ||| |||| || |||||||||||||| || ||| Sbjct 356657 AACCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAGAAG 356598 Query 26305 AGGGTCGGCGACTATCA 26321 | |||||||| || || Sbjct 356597 CGCGTCGGCGAGTACCA 356581 >seq1247 Length=1231281 Score = 111 bits (122), Expect = 3e-19 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934 |||||| || || || ||||| || |||||||||||||| ||| ||| || || || || Sbjct 216483 CGAGCGACTTGTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGC 216424 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||| |||| | ||| | ||| || | ||||||||| || || ||||||||||||| Sbjct 216423 CATCTACTGGTTGAAGAA-AAGAGGCCTCATGCCCGGCCTCACCTACTCCAACGAGCTCA 216365 Query 25994 TCAGCAGGGACGAGG 26008 ||||| ||||||||| Sbjct 216364 TCAGCCGGGACGAGG 216350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928410832098880