Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_019511.1 Length=136326 Score E Sequences producing significant alignments: (Bits) Value seq8470 100 2e-16 seq23546 86.0 5e-12 >seq8470 Length=217 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 56508 GCATCTAAAAAGTAAACAAGTGTCTCTACAGCATCCGTGTGTTTCCATTCATCATACTTA 56567 |||||||| || || || | || ||||||||||| |||| |||||||| ||||| || Sbjct 217 GCATCTAAGAAATACACCATAGTTTCTACAGCATCGGTGTCTTTCCATTTGTCATAGTTC 158 Query 56568 ACAAGGTTCATACTAGATAGGTCACATACAAATGACCAATCTTCTTTATTAGGTAACATA 56627 | ||| || || || |||||| |||| ||||| ||||| || || || ||||||||| Sbjct 157 AAAAGATTTATGCTTGATAGGACACAGACAAACGACCATTCGTCATTGGATGGTAACATA 98 Query 56628 ATTTC 56632 ||||| Sbjct 97 ATTTC 93 >seq23546 Length=320 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 58359 TATAGTTTACAGAACGTTTAGATAAAAAGTC--CGTTAACTTAGTACTAATAACTTCATC 58416 |||| || | ||| ||||| |||||||| ||| || || | |||| |||||| Sbjct 90 TATAATTAATAGAGCGTTTTACAAAAAAGTCGCCGTGT--TTTGTTCCTATAATTTCATC 147 Query 58417 ATCAAACCATGACACTTCACTTAGTAACTCTTCATCAACATCAAAAAGTTTAGTATACCC 58476 |||||||||| || || || | || |||| |||||| | ||| | | || Sbjct 148 ATCAAACCATTCGGTTTGTGCTAATAGTTTTTGGTCAATATCAAATATTTTGGCAATTCC 207 Query 58477 AACAGCTACTAGAGAGTTATTAAGCCTATTTTTAATAAATTCTTGTACTACTTTCTTAGG 58536 | | ||| |||||| |||| | |||||||||||||| | ||| || ||||| Sbjct 208 GATACTCTCTAAAGAGTTGTTAAAACGCTTTTTAATAAATTCATTTACAACAGATTTAGG 267 Query 58537 TAAGAACTCTAGTTCCCCATCTTCATACATCCAATCAA 58574 |||||| |||| ||| || |||||| | |||||||||| Sbjct 268 TAAGAAATCTAATTCTCCTTCTTCAAAAATCCAATCAA 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 435911441527120