Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_019511.1
Length=136326
Score E
Sequences producing significant alignments: (Bits) Value
seq8470 100 2e-16
seq23546 86.0 5e-12
>seq8470
Length=217
Score = 100 bits (110), Expect = 2e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 56508 GCATCTAAAAAGTAAACAAGTGTCTCTACAGCATCCGTGTGTTTCCATTCATCATACTTA 56567
|||||||| || || || | || ||||||||||| |||| |||||||| ||||| ||
Sbjct 217 GCATCTAAGAAATACACCATAGTTTCTACAGCATCGGTGTCTTTCCATTTGTCATAGTTC 158
Query 56568 ACAAGGTTCATACTAGATAGGTCACATACAAATGACCAATCTTCTTTATTAGGTAACATA 56627
| ||| || || || |||||| |||| ||||| ||||| || || || |||||||||
Sbjct 157 AAAAGATTTATGCTTGATAGGACACAGACAAACGACCATTCGTCATTGGATGGTAACATA 98
Query 56628 ATTTC 56632
|||||
Sbjct 97 ATTTC 93
>seq23546
Length=320
Score = 86.0 bits (94), Expect = 5e-12
Identities = 151/218 (69%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 58359 TATAGTTTACAGAACGTTTAGATAAAAAGTC--CGTTAACTTAGTACTAATAACTTCATC 58416
|||| || | ||| ||||| |||||||| ||| || || | |||| ||||||
Sbjct 90 TATAATTAATAGAGCGTTTTACAAAAAAGTCGCCGTGT--TTTGTTCCTATAATTTCATC 147
Query 58417 ATCAAACCATGACACTTCACTTAGTAACTCTTCATCAACATCAAAAAGTTTAGTATACCC 58476
|||||||||| || || || | || |||| |||||| | ||| | | ||
Sbjct 148 ATCAAACCATTCGGTTTGTGCTAATAGTTTTTGGTCAATATCAAATATTTTGGCAATTCC 207
Query 58477 AACAGCTACTAGAGAGTTATTAAGCCTATTTTTAATAAATTCTTGTACTACTTTCTTAGG 58536
| | ||| |||||| |||| | |||||||||||||| | ||| || |||||
Sbjct 208 GATACTCTCTAAAGAGTTGTTAAAACGCTTTTTAATAAATTCATTTACAACAGATTTAGG 267
Query 58537 TAAGAACTCTAGTTCCCCATCTTCATACATCCAATCAA 58574
|||||| |||| ||| || |||||| | ||||||||||
Sbjct 268 TAAGAAATCTAATTCTCCTTCTTCAAAAATCCAATCAA 305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 435911441527120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |