Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1473 116 2e-20 seq809 100 2e-15 seq1138 93.3 3e-13 >seq1473 Length=2736273 Score = 116 bits (128), Expect = 2e-20 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTA-CTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 || ||||| || || |||||||| ||| | | |||| | | || ||||||| || || Sbjct 1454962 CGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATG-TTGTAATCAGAGAGGGT 1454904 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || |||||||||||||| || || | |||||| ||||| ||||| || Sbjct 1454903 ACGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGGGGAATACC 1454844 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| || || || |||||| |||| |||||| || | | ||||| Sbjct 1454843 TTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCAACCTCAAG 1454784 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 ||| || || || || ||||| ||||| || || Sbjct 1454783 GGTGATGGTCTTGCCAGTGAGGGTCTTCACAAA 1454751 Score = 105 bits (116), Expect = 4e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || |||||||| || || ||||| | || || |||| || || Sbjct 1452910 CGCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTG 1452851 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||| ||||| || |||||||| || | | || || ||||||||||| ||| Sbjct 1452850 CGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCCT 1452791 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || ||||| ||||| || |||||| ||||| ||| ||| ||| | |||||| Sbjct 1452790 TCTTTGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAACCTCAAGG 1452731 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || ||||| ||||| || || || || Sbjct 1452730 GTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTG 1452693 Score = 105 bits (116), Expect = 4e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || |||||||| || || |||||| | || ||||||| || || Sbjct 1455190 CGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGTG 1455131 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||| | ||| || |||||||| || | | ||||||||||| ||||||||| Sbjct 1455130 CGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCCT 1455071 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || || || ||| ||| |||| || ||| ||| | ||||| Sbjct 1455070 TCCTTGTCCTGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACCTCAAGA 1455011 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || || ||||| || ||||| || Sbjct 1455010 GTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTG 1454973 Score = 100 bits (110), Expect = 2e-15 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| ||||| || |||||||| || || ||| ||| || || || || | || Sbjct 2588179 ACGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATG--TTGTAGTCTGACAGT 2588122 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | |||||| |||||||| |||||||| || | | || || || || ||||| Sbjct 2588121 GTGCGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATG 2588062 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 ||||||||||| || || || ||||||| ||||| || ||| || || | ||| Sbjct 2588061 CCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCA 2588002 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || ||||| ||||| ||||| || || Sbjct 2588001 AGGGTGATTGTCTTGCCAGTGAGCGTCTTCACGAAGATCTG 2587961 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| || || | | |||||| ||||| || |||||||| || | | ||| Sbjct 1453552 TTGTAGTCAGAGAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGT 1453493 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||||||||| ||||| ||||| ||||| || || ||| ||| | ||| ||| Sbjct 1453492 TGGTCAGGAGGAATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCA 1453433 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| | || ||||| |||||||| || ||||| ||||| || || ||||| Sbjct 1453432 CTGTCCTCAACCTCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTG 1453377 Score = 95.1 bits (104), Expect = 8e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || ||||| | || || |||| || || | | Sbjct 1452451 AGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 1452392 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| | || || |||||||| || | | ||| |||||||||||||| |||||| Sbjct 1452391 CCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCC 1452332 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || || || ||| ||| |||| ||| ||| || | | |||||||| Sbjct 1452331 TTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTG 1452272 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| || || ||||| Sbjct 1452271 ATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTG 1452237 Score = 95.1 bits (104), Expect = 8e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || || || | || || || | ||| || | | Sbjct 2587947 AGACGCAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGTGTACGG 2587888 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| |||||||| |||||||| || | | || || || || ||||| |||||| Sbjct 2587887 CCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 2587828 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || || || ||||||| || || || ||| || || | |||||||| Sbjct 2587827 TTGTCCTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCAAGGGTT 2587768 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| ||||| || || Sbjct 2587767 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 2587733 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || |||||||| || || ||| || | || || |||| ||||| Sbjct 1454050 CGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTG 1453991 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||| ||||| || |||||||| || | | ||||| ||||||||||| ||| Sbjct 1453990 CGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCT 1453931 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || || || || ||| |||| ||| ||| | | ||||||| Sbjct 1453930 TCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAACTTCAAGG 1453871 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || || || || || || || Sbjct 1453870 GTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTG 1453833 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || ||||||||||| ||| ||||| | || || |||| || || Sbjct 1454278 CGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGATAAGGTG 1454219 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| | |||||| |||||||| || | | || |||||||| ||||| ||| Sbjct 1454218 CGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCT 1454159 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || || || || ||| |||| ||| ||| || |||||| Sbjct 1454158 TCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTCGACCTCAAGG 1454099 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || || || Sbjct 1454098 GTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTG 1454061 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| ||||||||||| | | || || || || ||||| |||||||| Sbjct 2587657 ATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTT 2587598 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || || || ||||||| |||||||| ||| || | | || ||||| || Sbjct 2587597 GTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGAT 2587538 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| || || || || Sbjct 2587537 GGTCTTGCCAGTGAGGGTCTTCACAAAGATCTG 2587505 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || || || | || || |||| ||||| | Sbjct 2590184 AGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGA 2590243 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||| || ||||| |||||||| || | | || || ||||| ||||| |||||| Sbjct 2590244 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCC 2590303 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || || || ||||||| |||||||| ||| || | | || ||||| Sbjct 2590304 TTGTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTG 2590363 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| || || || || Sbjct 2590364 ATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTG 2590398 >seq809 Length=886213 Score = 100 bits (110), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || ||||| || || || || || |||||||| ||||| || || || ||||||| Sbjct 477249 ATGCTGTTATTACGGTGCCCGCCTACTTCAATGATTCCCAACGCCAGGCTACAAAAGATG 477190 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||| | || || |||||| | ||||| || ||||||||||| ||||| || Sbjct 477189 CAGGAACAATCTCTGGGCTCAATGTTCTGCGTATCATCAATGAACCAACTGCAGCTGCTA 477130 Query 474855 TTGCTTATGGTCTTG 474869 | || ||||| |||| Sbjct 477129 TCGCATATGG-CTTG 477116 >seq1138 Length=1540511 Score = 93.3 bits (102), Expect = 3e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089 ||||||||||| || | || || |||||||||| || || | || | ||| Sbjct 98338 TTTGAAGGTGAGCGAGCCATGACCAAGGATAATAACATCCTGGGCAAATTCGAGCTTACC 98279 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| || |||||||| || || || || ||||| || |||||||| ||||| || Sbjct 98278 GGTATTCCGCCCGCTCCCAGGGGCGTCCCCCAGATTGAGGTGACTTTTGACATTGACGCT 98219 Query 476150 AATGGTATTCTTAATGTTACTGCT 476173 ||||| ||||| ||||| ||||| Sbjct 98218 AATGGAATTCTCAATGTGTCTGCT 98195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266575919116796