Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 116 2e-20
seq809 100 2e-15
seq1138 93.3 3e-13
>seq1473
Length=2736273
Score = 116 bits (128), Expect = 2e-20
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTA-CTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|| ||||| || || |||||||| ||| | | |||| | | || ||||||| || ||
Sbjct 1454962 CGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATG-TTGTAATCAGAGAGGGT 1454904
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | |||||| || |||||||||||||| || || | |||||| ||||| ||||| ||
Sbjct 1454903 ACGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGGGGAATACC 1454844
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||||||| || || || |||||| |||| |||||| || | | |||||
Sbjct 1454843 TTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCAACCTCAAG 1454784
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763
||| || || || || ||||| ||||| || ||
Sbjct 1454783 GGTGATGGTCTTGCCAGTGAGGGTCTTCACAAA 1454751
Score = 105 bits (116), Expect = 4e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| ||||| || |||||||| || || ||||| | || || |||| || ||
Sbjct 1452910 CGCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTG 1452851
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | |||||| ||||| || |||||||| || | | || || ||||||||||| |||
Sbjct 1452850 CGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCCT 1452791
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
|| ||||| ||||| || |||||| ||||| ||| ||| ||| | ||||||
Sbjct 1452790 TCTTTGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAACCTCAAGG 1452731
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || ||||| || ||||| ||||| || || || ||
Sbjct 1452730 GTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTG 1452693
Score = 105 bits (116), Expect = 4e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| ||||| || |||||||| || || |||||| | || ||||||| || ||
Sbjct 1455190 CGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGTG 1455131
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | |||||| | ||| || |||||||| || | | ||||||||||| |||||||||
Sbjct 1455130 CGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCCT 1455071
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
|||||||| || || || ||| ||| |||| || ||| ||| | |||||
Sbjct 1455070 TCCTTGTCCTGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACCTCAAGA 1455011
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || ||||| || || ||||| || ||||| ||
Sbjct 1455010 GTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTG 1454973
Score = 100 bits (110), Expect = 2e-15
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
||| ||||| || |||||||| || || ||| ||| || || || || | ||
Sbjct 2588179 ACGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATG--TTGTAGTCTGACAGT 2588122
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|| | | |||||| |||||||| |||||||| || | | || || || || |||||
Sbjct 2588121 GTGCGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATG 2588062
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728
||||||||||| || || || ||||||| ||||| || ||| || || | |||
Sbjct 2588061 CCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCA 2588002
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || || ||||| ||||| ||||| || ||
Sbjct 2588001 AGGGTGATTGTCTTGCCAGTGAGCGTCTTCACGAAGATCTG 2587961
Score = 96.9 bits (106), Expect = 2e-14
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|| || |||| || || | | |||||| ||||| || |||||||| || | | |||
Sbjct 1453552 TTGTAGTCAGAGAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGT 1453493
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
|| ||||||||||| ||||| ||||| ||||| || || ||| ||| | ||| |||
Sbjct 1453492 TGGTCAGGAGGAATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCA 1453433
Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| | || ||||| |||||||| || ||||| ||||| || || |||||
Sbjct 1453432 CTGTCCTCAACCTCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTG 1453377
Score = 95.1 bits (104), Expect = 8e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614
||||| || |||||||| || || ||||| | || || |||| || || | |
Sbjct 1452451 AGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 1452392
Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674
|||||| | || || |||||||| || | | ||| |||||||||||||| ||||||
Sbjct 1452391 CCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCC 1452332
Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734
||||| || || || ||| ||| |||| ||| ||| || | | ||||||||
Sbjct 1452331 TTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTG 1452272
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || || ||||| || || |||||
Sbjct 1452271 ATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTG 1452237
Score = 95.1 bits (104), Expect = 8e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614
||||| || |||||||| || || || || | || || || | ||| || | |
Sbjct 2587947 AGACGCAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGTGTACGG 2587888
Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674
|||||| |||||||| |||||||| || | | || || || || ||||| ||||||
Sbjct 2587887 CCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 2587828
Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734
||||| || || || ||||||| || || || ||| || || | ||||||||
Sbjct 2587827 TTGTCCTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCAAGGGTT 2587768
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || ||||| ||||| ||||| || ||
Sbjct 2587767 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 2587733
Score = 87.8 bits (96), Expect = 1e-11
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| ||||| || |||||||| || || ||| || | || || |||| |||||
Sbjct 1454050 CGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTG 1453991
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | |||||| ||||| || |||||||| || | | ||||| ||||||||||| |||
Sbjct 1453990 CGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCT 1453931
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
|||||||| || || || || ||| |||| ||| ||| | | |||||||
Sbjct 1453930 TCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAACTTCAAGG 1453871
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || || || || || || || || ||
Sbjct 1453870 GTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTG 1453833
Score = 87.8 bits (96), Expect = 1e-11
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| ||||| || ||||||||||| ||| ||||| | || || |||| || ||
Sbjct 1454278 CGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGATAAGGTG 1454219
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| |||||| | |||||| |||||||| || | | || |||||||| ||||| |||
Sbjct 1454218 CGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCT 1454159
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
|||||||| || || || || ||| |||| ||| ||| || ||||||
Sbjct 1454158 TCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTCGACCTCAAGG 1454099
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || ||||| ||||| || || || ||
Sbjct 1454098 GTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTG 1454061
Score = 87.8 bits (96), Expect = 1e-11
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| || ||||| ||||||||||| | | || || || || ||||| ||||||||
Sbjct 2587657 ATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTT 2587598
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| || || || ||||||| |||||||| ||| || | | || ||||| ||
Sbjct 2587597 GTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGAT 2587538
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || ||||| ||||| || || || ||
Sbjct 2587537 GGTCTTGCCAGTGAGGGTCTTCACAAAGATCTG 2587505
Score = 86.0 bits (94), Expect = 4e-11
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614
||||| || |||||||| || || || || | || || |||| ||||| |
Sbjct 2590184 AGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGA 2590243
Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674
||||| || ||||| |||||||| || | | || || ||||| ||||| ||||||
Sbjct 2590244 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCC 2590303
Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734
||||| || || || ||||||| |||||||| ||| || | | || |||||
Sbjct 2590304 TTGTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTG 2590363
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || ||||| ||||| || || || ||
Sbjct 2590364 ATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTG 2590398
>seq809
Length=886213
Score = 100 bits (110), Expect = 2e-15
Identities = 104/135 (77%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || ||||| || || || || || |||||||| ||||| || || || |||||||
Sbjct 477249 ATGCTGTTATTACGGTGCCCGCCTACTTCAATGATTCCCAACGCCAGGCTACAAAAGATG 477190
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| |||| ||| | || || |||||| | ||||| || ||||||||||| ||||| ||
Sbjct 477189 CAGGAACAATCTCTGGGCTCAATGTTCTGCGTATCATCAATGAACCAACTGCAGCTGCTA 477130
Query 474855 TTGCTTATGGTCTTG 474869
| || ||||| ||||
Sbjct 477129 TCGCATATGG-CTTG 477116
>seq1138
Length=1540511
Score = 93.3 bits (102), Expect = 3e-13
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089
||||||||||| || | || || |||||||||| || || | || | |||
Sbjct 98338 TTTGAAGGTGAGCGAGCCATGACCAAGGATAATAACATCCTGGGCAAATTCGAGCTTACC 98279
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
|||||||| || |||||||| || || || || ||||| || |||||||| ||||| ||
Sbjct 98278 GGTATTCCGCCCGCTCCCAGGGGCGTCCCCCAGATTGAGGTGACTTTTGACATTGACGCT 98219
Query 476150 AATGGTATTCTTAATGTTACTGCT 476173
||||| ||||| ||||| |||||
Sbjct 98218 AATGGAATTCTCAATGTGTCTGCT 98195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3266575919116796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |