Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq797 123 3e-23 >seq797 Length=1598739 Score = 123 bits (136), Expect = 3e-23 Identities = 509/782 (65%), Gaps = 33/782 (4%) Strand=Plus/Minus Query 160203 TACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATC 160262 ||| |||| |||||| ||| || ||| | || ||| || || | ||| || Sbjct 996544 TACGGAGCCCCTTTCCTCACATCCCCTGATAAATAGCTCCATTTGACCGCGCGGGCGATG 996485 Query 160263 GCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGG-GGAACGGCACCGGGAACGCCGGG 160321 || |||||||| || |||||| | ||| || | | || || | ||||| ||| ||| Sbjct 996484 GCTTGCATGTCCGACGTGTCGAACTTG-ACGTTTGCAGGCACTGATCCGGGCACGGAGGG 996426 Query 160322 CATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTC 160381 ||| ||||||| |||||||||| ||| ||||| |||||||| |||||||| ||| || Sbjct 996425 CATCCGCTGTAAAGTGGCCCACAAGTGCTCGTCCGGGCTGTAGGTGTCCTTCTCCCACTC 996366 Query 160382 CATGAACTCTCCGATTAACCT----GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCA 160437 || ||| | | ||||| |||||||| ||||| ||| ||| ||| | Sbjct 996365 CAGCAACACC----TGAACCTCTCGGTCCCGCATCACGTGCTCCACGAAGGCCCTGCTGG 996310 Query 160438 CGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCT 160497 | |||||||| || | || ||| || || | || || || | | |||| |||| Sbjct 996309 CTACAAAGTAGGCATTCCCCATGAACATGGGGCTTCTAATGGGAGGTGGG-CTTT-TCCT 996252 Query 160498 GAC--CGGTGTTAGACACC--ACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACC 160553 || |||| | |||| | | || | | || ||| | | ||| | | Sbjct 996251 CACGTCGGTCCT-GACAACTGAGTC-TGTGACGTTGTAGTGA---TATTGCCAACGTTGC 996197 Query 160554 ATCTTGTG--CGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCA 160611 |||||| | ||| || |||||| || | ||||| || | ||| ||||| Sbjct 996196 GTCTTGTAATCATTGG--TGGCTTCCGTTTCCATGCTGTTCTTCCCATTGAGGACTTTCA 996139 Query 160612 GCTGCTTG-ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATC 160670 ||||| || |||||| ||| ||||| | ||||||||| || ||||| ||| | | Sbjct 996138 AA-GCTTGCACCATCTCTCTGTTGGTCTTAATCGGAAAGTCTGTCCCGCATGTGTTCAGC 996080 Query 160671 ACGTACTTCCATTTCGCGC-TCAG--GTCGTGCAGGTCCCTCATGCAATTAATATCTGCC 160727 | |||| |||| || | | || | | | || | |||||| || | ||| ||| Sbjct 996079 AGGTACCTCCAC--CGGACATGAGACGCCAACAAACTCTC-CATGCAGTTCAAATCAGCC 996023 Query 160728 TGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTA 160787 ||||| || ||| || | || | || || |||| ||| | || | || || || Sbjct 996022 TGCACTCGCGCCCATGAGGTATAAATCACATTTTCTAATTTCCCAGCTATGAATACATTC 995963 Query 160788 TCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCC 160847 || || || || || || | ||| ||| | ||| || | ||||||||| Sbjct 995962 TCAAAGCAGGATACAATGGCTTTCACGGCCTCATGGAATTTCGCTGTAGATTTTCGGTCC 995903 Query 160848 ACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATC 160907 ||||||||||| || | ||||||||| | ||| ||||| | | || | ||||||||| Sbjct 995902 ACGTGCACGCAGTAGATGTTCTGAGGGGTGTAAATGGCACGCAACAGTCGCTCGAACATT 995843 Query 160908 TCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTC 160967 || |||| | |||||||| || ||||| || || ||||| || |||| || |||| Sbjct 995842 TCGATCTGTTCGTGGATCACCATGGAGTATGCGATGGGAAAATCCCTCTCTTCTTCACTC 995783 Query 160968 AG 160969 || Sbjct 995782 AG 995781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576949515974520