Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1148 120 4e-22 seq1247 93.3 5e-14 >seq1148 Length=2189075 Score = 120 bits (132), Expect = 4e-22 Identities = 550/856 (64%), Gaps = 41/856 (5%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| | |||||||| || | ||||||||||| | | | ||| | | Sbjct 534503 CCCGCAGCACATGCTGATGCGGGTGGCGGTGGGCATCCACGGCGCGCGCGTGGATGCCGC 534444 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | ||||| ||| || | | || | | ||||| ||||| |||| || || || Sbjct 534443 CATTGAGACGTACAACCTGCTTTCAGAGAGATGGTTCACGCACGCCTCACCCACTCTTTT 534384 Query 75331 CAATGCTGGTACACCAA--GACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||| ||||| |||||| | || ||| ||||||| |||||||| | |||| ||||| Sbjct 534383 CAACGCTGG--CACCAACCGGCCACAGTTGTCCAGCTGCTTCCTGCTAGCCATGAAGGAC 534326 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| ||| | || ||||| | || || | | ||||||| | ||||| || | ||| Sbjct 534325 GACAGCATCGATGGCATCTACGACACGCTCAAGCAGTGTGCCCTCATCTCCAAATCGGCA 534266 Query 75449 GGGGGTATTGGGATG-----CACATCCAT--GATG---TGAGAGCCAATAAATCTCGTAT 75498 || || || || || || | ||| | | || ||| || ||| | Sbjct 534265 GGTGGCATCGGCGTGGCGGTCAGCTGCATCCGTTCCACTGGCAGC---TACATCGCC--- 534212 Query 75499 TCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 75558 || || ||||| | || | || | | || ||||| || || | ||| ||| Sbjct 534211 ----GGCACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTGCGTGTCTACAACAACAC 534156 Query 75559 AGCGCGCTATGTAAATCAAGCGGGGCGTC-----GCAAGGGGTCCATCGCGGTCTACTTG 75613 |||||||| || | || | | ||| | || || | || |||| | ||| || Sbjct 534155 GGCGCGCTACGTGGACCAGG-GAGGCAACAAGCGGCCCGGCG-CCTTCGCCATGTACCTG 534098 Query 75614 GAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGA 75672 || || ||||| || ||| | || ||||| ||| | | || ||| ||| | || Sbjct 534097 GAGCCGTGGCACTTTGACATCTTCGACTTCCTGGAGCTGAAGAAG-AACACAGGCAAAGA 534039 Query 75673 AGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCG 75732 ||| || | || || || | || ||||| ||||| || ||||||||| | Sbjct 534038 GGAGCAGCGCGCCCGTGACCTGTTCTTCGGTCTCTGGATCCCAGATCTGTTCATGAAGAG 533979 Query 75733 GGTTGAGG--AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCC 75790 ||| ||| | || | ||||| || | |||||| | || || || || | Sbjct 533978 GGTAGAGAGCAACCAGGAC--TGGTCGCTCATGTGTCCAAATGAGTGCCCTGGCCTGGAC 533921 Query 75791 GAC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC 75849 || || | |||||| |||||||| || | |||||| ||||| ||||||| | | Sbjct 533920 GAGTGCTG-GGGTGATGAGTTTGAGGCTTTGTACACACGCTATGAGAAGGAGGGCCGGGT 533862 Query 75850 CAATGCGACTG-TACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGA 75908 ||| ||| || | |||| | || ||| | || || || | || ||||| |||| Sbjct 533861 CAA-GCGGGTGGTGAAAGCCCAGCAGGTGTGGTACGCCATCATCGAGTCTCAGACAGAGA 533803 Query 75909 CTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATT 75968 | || || || || ||||| ||||||||||| || || ||||| ||||| |||| Sbjct 533802 CGGGCACGCCGTACATGCTCTACAAGGATGCATGCAATCGCAAGAGCAACCAGCAGAACC 533743 Query 75969 TGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATG 76028 |||| || |||||| || || || |||||||| || | || ||||| |||| | Sbjct 533742 TGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGATCGTCGAATACACCAGCCAGGACG 533683 Query 76029 AGACGGCTGTTTGCAA 76044 || ||| || ||||| Sbjct 533682 AGGTGGCCGTGTGCAA 533667 >seq1247 Length=1231281 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 65074 GCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC 65133 |||||||| ||| | || ||||| |||||||| |||||||||||||| || ||| | Sbjct 216485 GCCGAGCGACTTGTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 216426 Query 65134 GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTT 65193 || || || ||||||||||| | || |||||||| ||||| || ||| || || || Sbjct 216425 GCCATCTACTGGTTGAAGAAAAGAGGCCTCATGCCCGGCCTCACCTACTCCAACGAGCTC 216366 Query 65194 ATTTCCCGAGATGAGG 65209 || ||| || |||| Sbjct 216365 ATCAGCCGGGACGAGG 216350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596290875225760