Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_020853.1
Length=56958
Score E
Sequences producing significant alignments: (Bits) Value
seq18074 111 6e-20
seq14652 89.7 2e-13
seq5160 86.0 2e-12
>seq18074
Length=241
Score = 111 bits (122), Expect = 6e-20
Identities = 140/191 (73%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 51544 GACCATGCGGGCCATGTTGATCGAACCCAGAAGACAGGCACCGTAGGGTGGCAGGGGTTG 51603
||| | ||| | || ||| | || || || || ||||| |||||||| |||||||| ||
Sbjct 201 GACGAAGCGCGTCAGGTTCACGGAGCCGAGCAGGCAGGCGCCGTAGGGCGGCAGGGGCTG 142
Query 51604 TTCGCCGCAGGGGTTTGTGGCCGCGATGACCTC---GCAATAGTTCAGGTTGTTCCGGTT 51660
|| ||||||||||| ||||| |||| ||| || |||| ||||||| |
Sbjct 141 CTCACCGCAGGGGTTGGTGGCGCGGATGTTCTCCGTCCACCAGTT---GTTGTTCTTCTC 85
Query 51661 ATTGATCCGGTCGATGAACAGGACACCCGGCTCAGCAACATCATAGGTGTGCTTCATCAT 51720
||||||||||||||| | || || ||||||||||||| ||| |||||| |||| ||
Sbjct 84 ATTGATCCGGTCGATCAGCACGAAGCCCGGCTCAGCAAAATCGTAGGTGGAGGTCATGAT 25
Query 51721 GGCGTCCCACA 51731
||||||||
Sbjct 24 CAGGTCCCACA 14
>seq14652
Length=231
Score = 89.7 bits (98), Expect = 2e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 51354 ACATGATCAGCGCATCGGCCAGACCGGTGACACCCAGACCAAGGCGGCGTTTGTCGTGAG 51413
|||| | || ||||| ||||| || ||||| || || || | || || ||| | || |
Sbjct 15 ACATCAGCAAAGCATCCGCCAGCCCCGTGACCCCAAGCCCGATCCGCCGCTTGGCCTGCG 74
Query 51414 CCTCTTTGTCTTGGGCGGGCAGTGGGAACTTGGACGTGTCCACCACATTGTCCATCATGC 51473
|||| | || | ||||| || || || |||| |||||||||||||||||||| |
Sbjct 75 CCTCGGCGCGCTGTTCCGGCAGCGGAAAGTTTGACGCATCCACCACATTGTCCATCATCC 134
Query 51474 GGATGGCGGTGCGGACCAGCTTGTCCAGCGCC 51505
||||||| |||| ||||| || |||| |||
Sbjct 135 GGATGGCTGTGCTGACCAACTCCGCCAGAGCC 166
>seq5160
Length=206
Score = 86.0 bits (94), Expect = 2e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 43994 CTTTGGCCTCAGCCATAATCTCTTTCTGGCCTTCAACGATGTCTTTCTTCTCAACCTCAA 44053
|||| ||||| ||||| | |||||| || || | |||||||| ||||| | |||||
Sbjct 7 CTTTCGCCTCGGCCATTACCTCTTTTTGCTGATCGGCAATGTCTTTTTTCTCCATCTCAA 66
Query 44054 GCCGCTCATAGCGTTCGATGAACTGGCGCAGTTCCTC 44090
| || ||| ||||||||||||||||||||| ||| ||
Sbjct 67 GGCGTTCAAAGCGTTCGATGAACTGGCGCAATTCGTC 103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 182063155044080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |