Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq18074 111 6e-20 seq14652 89.7 2e-13 seq5160 86.0 2e-12 >seq18074 Length=241 Score = 111 bits (122), Expect = 6e-20 Identities = 140/191 (73%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 51544 GACCATGCGGGCCATGTTGATCGAACCCAGAAGACAGGCACCGTAGGGTGGCAGGGGTTG 51603 ||| | ||| | || ||| | || || || || ||||| |||||||| |||||||| || Sbjct 201 GACGAAGCGCGTCAGGTTCACGGAGCCGAGCAGGCAGGCGCCGTAGGGCGGCAGGGGCTG 142 Query 51604 TTCGCCGCAGGGGTTTGTGGCCGCGATGACCTC---GCAATAGTTCAGGTTGTTCCGGTT 51660 || ||||||||||| ||||| |||| ||| || |||| ||||||| | Sbjct 141 CTCACCGCAGGGGTTGGTGGCGCGGATGTTCTCCGTCCACCAGTT---GTTGTTCTTCTC 85 Query 51661 ATTGATCCGGTCGATGAACAGGACACCCGGCTCAGCAACATCATAGGTGTGCTTCATCAT 51720 ||||||||||||||| | || || ||||||||||||| ||| |||||| |||| || Sbjct 84 ATTGATCCGGTCGATCAGCACGAAGCCCGGCTCAGCAAAATCGTAGGTGGAGGTCATGAT 25 Query 51721 GGCGTCCCACA 51731 |||||||| Sbjct 24 CAGGTCCCACA 14 >seq14652 Length=231 Score = 89.7 bits (98), Expect = 2e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 51354 ACATGATCAGCGCATCGGCCAGACCGGTGACACCCAGACCAAGGCGGCGTTTGTCGTGAG 51413 |||| | || ||||| ||||| || ||||| || || || | || || ||| | || | Sbjct 15 ACATCAGCAAAGCATCCGCCAGCCCCGTGACCCCAAGCCCGATCCGCCGCTTGGCCTGCG 74 Query 51414 CCTCTTTGTCTTGGGCGGGCAGTGGGAACTTGGACGTGTCCACCACATTGTCCATCATGC 51473 |||| | || | ||||| || || || |||| |||||||||||||||||||| | Sbjct 75 CCTCGGCGCGCTGTTCCGGCAGCGGAAAGTTTGACGCATCCACCACATTGTCCATCATCC 134 Query 51474 GGATGGCGGTGCGGACCAGCTTGTCCAGCGCC 51505 ||||||| |||| ||||| || |||| ||| Sbjct 135 GGATGGCTGTGCTGACCAACTCCGCCAGAGCC 166 >seq5160 Length=206 Score = 86.0 bits (94), Expect = 2e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 43994 CTTTGGCCTCAGCCATAATCTCTTTCTGGCCTTCAACGATGTCTTTCTTCTCAACCTCAA 44053 |||| ||||| ||||| | |||||| || || | |||||||| ||||| | ||||| Sbjct 7 CTTTCGCCTCGGCCATTACCTCTTTTTGCTGATCGGCAATGTCTTTTTTCTCCATCTCAA 66 Query 44054 GCCGCTCATAGCGTTCGATGAACTGGCGCAGTTCCTC 44090 | || ||| ||||||||||||||||||||| ||| || Sbjct 67 GGCGTTCAAAGCGTTCGATGAACTGGCGCAATTCGTC 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182063155044080