Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1473 120 6e-22 >seq1473 Length=2736273 Score = 120 bits (132), Expect = 6e-22 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| ||||| | || | ||| | |||| |||||| ||| || || ||| Sbjct 1454287 ATGCCACCTCGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCA 1454228 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || ||| |||| || ||||| |||||||||||||| || ||||| |||||||| Sbjct 1454227 GATAAGGTGCGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGG 1454168 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAAT--CTGACGATT 192484 || || ||||| || || || |||||| || ||||| | || | ||| | | Sbjct 1454167 GGAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCC--CT 1454110 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || || ||||| || ||||| | || || | ||| |||||||| Sbjct 1454109 CGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 1454058 Score = 114 bits (126), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||| ||||| | || | ||| | || | ||||| ||| || |||||||| Sbjct 1455196 CCACCTCGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAG 1455137 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| || |||| || |||||||| |||||||| || || |||||||||||||| || Sbjct 1455136 AGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGA 1455077 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAAT--CTGACGATTCTA 192487 |||||||| || || || ||||| ||| ||||| | | | ||| | || | Sbjct 1455076 ATTCCTTCCTTGTCCTGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTC--CTCAA 1455019 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || ||||| ||||| |||||||| | || || | ||| |||||||| Sbjct 1455018 CCTCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTGCAT 1454970 Score = 113 bits (124), Expect = 9e-20 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || | ||| | || | |||||| ||| || || ||| Sbjct 1452463 ATTCCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 1452404 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| ||||| ||||| ||||||||||| || || || |||||||| Sbjct 1452403 GAGAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGA 1452344 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAAT--CTGACGATT 192484 || || ||||| || || || ||||| ||| ||||| | || | ||| | || Sbjct 1452343 GGAATACCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCC--TT 1452286 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || || ||||| || ||||||| || || | ||| || |||||||| Sbjct 1452285 CAACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTT 1452231 Score = 102 bits (112), Expect = 2e-16 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||| | || | ||| | |||||| || || ||| || || ||| Sbjct 1454743 ATGCCACCTCTCAAACGCAGGACAAGATGAAGAGTAGCTTCCTTTTGGATGTTGTAGTCA 1454684 Query 192367 GATAATGTTCGTTCATCATCCAAT-TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || ||| ||||| | ||||| ||||||||||| | ||||| |||| ||| Sbjct 1454683 GAGAGGGTGCGATCA-CATCCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGG 1454625 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAAT--CTGACGAT 192483 || || ||||| || |||| ||||| ||| ||||| | || || ||| | Sbjct 1454624 CGGAATACCTTCCTTGTCTTTGATTTTGGCTTTGACATTCTCAACAGTATCACTGCC--C 1454567 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || || || ||||||| ||||| | ||| |||||||| Sbjct 1454566 TCGACCTCAAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 1454514 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| ||||| || || | ||| | || | ||| || ||| || || ||| Sbjct 1452691 ATGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 1452632 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| ||||||||||| ||||| || || || |||||||| |||||| Sbjct 1452631 GAGAGGGTGCGGCCATCTTCCAATTGTTTGCCAGCGAATATCAACCTCTGTTGGTCAGGT 1452572 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || | || ||||| || | ||| | || ||| | || Sbjct 1452571 GGAATGCCTTCCTTGTACTGGATTTTGGCCTTCATATTCTCAACAGTATCACTCCCCTCA 1452512 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| | || || ||||||| || || | ||| ||||||||| Sbjct 1452511 ACCTCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATT 1452461 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| ||||| | || | ||| | || | || || ||| || || ||| Sbjct 1454059 ATGCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 1454000 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| |||||| |||||||| || || |||||||| ||||| Sbjct 1453999 GAGAGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGA 1453940 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| || ||||| | || || || Sbjct 1453939 GGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCA 1453880 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || ||||| | ||||| | |||||||||||| Sbjct 1453879 ACTTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || ||||| | || | ||| | || | ||| || ||| || || ||||| Sbjct 2590175 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2590234 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || | || |||| || |||||||||||||| || ||||| || |||||||| Sbjct 2590235 AGAGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGA 2590294 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || ||||| ||| ||||| |||| || | || || Sbjct 2590295 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACC 2590354 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| || ||||| | || || | ||| |||||||| || Sbjct 2590355 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2590404 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| ||||| | || | ||| | |||||||| || ||| || |||||| Sbjct 1454971 ATGCCACCTCGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCA 1454912 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | || || ||||||||||| | || ||||| ||||| Sbjct 1454911 GAGAGGGTACGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGG 1454852 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || |||||| || ||||| | | ||| | ||| Sbjct 1454851 GGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCA 1454792 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | || || | ||| | |||||| Sbjct 1454791 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAACAACTGCAT 1454742 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || | ||| | ||| | ||| || ||| || || || Sbjct 2587959 ATGCCACCCCTGAGACGCAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCT 2587900 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||| || |||| || | ||| || ||||||||||| || ||||| || || || Sbjct 2587899 GATAGTGTACGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGG 2587840 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| ||| ||||| || | || | ||| Sbjct 2587839 GGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGTTCA 2587780 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | || || | || |||||||| Sbjct 2587779 ACCTCAAGGGTTATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 2587730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984008539603950