Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 89.7 9e-13
seq10769 86.0 1e-11
>seq1473
Length=2736273
Score = 89.7 bits (98), Expect = 9e-13
Identities = 160/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||||| || || | || | ||| | |||| |||||| || || || ||
Sbjct 1454287 ATGCCACCTCGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCA 1454228
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
||||| | ||| | || || ||||| ||||||||||| || || ||||| || |||||
Sbjct 1454227 GATAAGGTGCGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGG 1454168
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTAT--CTGACGATT 172017
|| || ||||| || || || |||||| || ||||| | ||| | ||| | |
Sbjct 1454167 GGAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCC--CT 1454110
Query 172018 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
| || || || || ||||| || ||||| | || || | || ||||||||
Sbjct 1454109 CGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 1454058
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||||| || || || || | ||| | || | ||| || || || || ||
Sbjct 1453147 ATGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 1453088
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || || | || |||| |||||| |||||||| || || ||||||||||||||
Sbjct 1453087 GAGAGGGAGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGA 1453028
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| || || ||||| || ||||| | || || | ||
Sbjct 1453027 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCA 1452968
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| | ||| || ||||||| || || | || ||||||||
Sbjct 1452967 ACCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452918
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||||| || || || || | ||| | || | ||| || ||| || || ||
Sbjct 1453375 ATGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCG 1453316
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || | || |||| |||||| |||||||| || || ||||||||||||||
Sbjct 1453315 GAGAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGA 1453256
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| || || ||||| || ||||| | || || | ||
Sbjct 1453255 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCA 1453196
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| | ||| || ||||||| || || | || ||||||||
Sbjct 1453195 ACCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1453146
Score = 86.0 bits (94), Expect = 1e-11
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| |||| |||||| |||||||| || || |||||||||||||| || || ||||| ||
Sbjct 1453984 TCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCCTTG 1453925
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
|| || ||||| || ||||| | ||| || || ||||| || || |||
Sbjct 1453924 TCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAACTTCAAGGGTGATG 1453865
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| | ||||| | |||||||||||
Sbjct 1453864 GTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830
Score = 86.0 bits (94), Expect = 1e-11
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972
|||| |||| || ||||||||||| || || ||||| ||||||||||| || ||||| |
Sbjct 2590245 CGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCT 2590304
Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032
| || || ||||| ||| ||||| ||||| || | || || || || || |
Sbjct 2590305 TGTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGA 2590364
Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|||| || ||||| | || || | || |||||||| ||
Sbjct 2590365 TGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2590404
Score = 84.2 bits (92), Expect = 4e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968
||| | || |||| |||||| |||||||| || || |||||||||||||| || || |||
Sbjct 1453762 CGTCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCT 1453703
Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028
||||| || || ||||| || || || | |||||| | || || || |||
Sbjct 1453702 TCTTTGTCCTGAATTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAACCTCAAGA 1453643
Query 172029 GTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| | || || ||||||| || || | ||||| |||||
Sbjct 1453642 GTGACAGTCTTGCCAGTTAGGGTCTTCACAAATATTTGCAT 1453602
>seq10769
Length=223
Score = 86.0 bits (94), Expect = 1e-11
Identities = 153/217 (71%), Gaps = 10/217 (5%)
Strand=Plus/Minus
Query 39153 TCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGC 39212
||||| || || || || || ||| || ||||| ||||| ||||| | ||||| | |
Sbjct 223 TCCCTTGAAATCAACTCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAAC 164
Query 39213 CAAAATATTGATGCAAAA--CTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTA 39270
|| || || || ||||| | || |||||||| || ||||||||| ||||| || |
Sbjct 163 CAGAAAATAGAA-CAAAAGGCCCCT-GAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAA 106
Query 39271 TTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtt 39330
| | | | | |||| || | || |||| |||| |||| |||||||||||| |
Sbjct 105 TCAGGCGTTCAGCAAAACTTGGTG-AT--TCTA---TCCACTTTAAGGCCCAATCTGCCT 52
Query 39331 tttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367
| || ||||||| || | |||||| || || |||||
Sbjct 51 TCTTCTTGATAGCCGGAAAATTTTCAATGGCCTTAAA 15
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904713109146600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |