Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10769 84.2 6e-11 >seq10769 Length=223 Score = 84.2 bits (92), Expect = 6e-11 Identities = 158/229 (69%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 133406 AAGCACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGG 133465 ||| | | ||| || || |||||| | ||||| ||| || ||||| | || ||| Sbjct 3 AAGAATATACTCTTTAAGGCCATTGAAAATTTTCCGGCTATCAAGAAGAAGGCAGATTGG 62 Query 133466 GCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCT 133525 || | || ||||| | || | | ||||||||| || || |||||||||| Sbjct 63 GCCTTAAAGTGGAT-----AGAATCAC-CAAGTTTTGCTGAACGCCTGATTGCTTTTGCA 116 Query 133526 GTAGTAGAGGGCAtttt--tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGC 133583 | || ||||||||||| |||||| || | || || |||||||| ||| | ||||| | Sbjct 117 GCTGTGGAGGGCATTTTCTTTTCAGGGG--CCTTTTGTTCTATTTTCTGGTTGAAAAAAC 174 Query 133584 GTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGA 133632 |||| | | || ||| || ||||| ||||| | ||||||||||| Sbjct 175 GTGGATTGATGCCCGGATTGACCTTTTCAAACGAGTTGATTTCAAGGGA 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471112757130049