Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1473 114 1e-20 >seq1473 Length=2736273 Score = 114 bits (126), Expect = 1e-20 Identities = 153/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || ||||| || || || || || || || || |||| || Sbjct 1452234 ATGCAAATCTTTGTGAAGACCCTAACTGGCAAGACCATCACCCTTGAGGTTGAAGGCAGT 1452293 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| || || || | |||| | ||| ||||| ||||| ||||| || ||||| ||||| Sbjct 1452294 GACACTGTTGAGAATGTTAAAGCCAAA-ATCCAGGACAAGGAAGGTATTCCTCCTGATCA 1452352 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||||||| || |||||| |||| ||| | | | | || || || || Sbjct 1452353 GCAAAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACCCTCTCTGACTACAA 1452412 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||| || || || || || || || |||| Sbjct 1452413 CATCCAGAAAGAGTCCACCCTCCATCTTG 1452441 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || ||||| || || || | || || || || || | | Sbjct 1453146 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGT 1453205 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||||| || | || || || ||||| ||||||||||| || ||||| || ||| Sbjct 1453206 GACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453265 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| ||||| || ||||| ||||| ||| | | | | || || || ||| Sbjct 1453266 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCCGACTACAAC 1453325 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || || | || ||||| |||| || ||| Sbjct 1453326 ATTCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGGC 1453373 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || ||||| || || || | || || || || || | | Sbjct 1452918 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGT 1452977 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||||| || | || || || ||||| ||||||||||| || ||||| || ||| Sbjct 1452978 GACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453037 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| ||||| || ||||| ||||| ||| | | | || || || ||| Sbjct 1453038 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCTCCCTCTCTGACTACAAC 1453097 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || | || ||||| |||| || ||| Sbjct 1453098 ATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGGC 1453145 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || || |||||||| || || || || || | || Sbjct 1453374 ATGCAAATATTTGTGAAGACCCTCACTGGCAAAACTATCACCCTAGAGGTTGAGGACAGT 1453433 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| || |||| || || || || || ||||||||||| || ||||| || ||| Sbjct 1453434 GACACTGTGGAAAATGTGAAGGTCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453493 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| ||||| || ||||| || || ||| | | | | || || || ||| Sbjct 1453494 CAGAGGTTGATATTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTCTCTGACTACAAC 1453553 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || | || ||||| |||| || ||| Sbjct 1453554 ATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGGC 1453601 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| ||||| || || || || || || || || || | || Sbjct 1454514 ATGCAGATCTTTGTGAAAACCCTAACTGGCAAGACAATCACTCTTGAGGTCGAGGGCAGT 1454573 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || || || | || ||| || ||| ||||||| ||||| || || || |||| Sbjct 1454574 GATACTGTTGAGAATGTCAAAGCCAAAATCAAAGACAAGGAAGGTATTCCGCCTCATCAC 1454633 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGA--GAAACATGTCAGATTATA 24881 || | |||||||||| || ||||||||| |||| || | | | | || || || | Sbjct 1454634 CAGAGGCTGATCTTTGCTGGCAAACAGCTG--GGATGTGATCGCACCCTCTCTGACTACA 1454691 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||| ||||||||| | || || || | || |||| ||| | || ||| Sbjct 1454692 ACATCCAAAAGGAAGCTACTCTTCATCTTGTCCTGCGTTTGAGAGGTGGC 1454741 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || || || || || | || Sbjct 1452690 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAGGACAGT 1452749 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| || |||| || || || || || ||||||||||| || ||||| || || Sbjct 1452750 GACACTGTTGAAAATGTCAAGGTGAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAG 1452809 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| ||||| || ||||| ||||| ||| | | | | || || || ||| Sbjct 1452810 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGACTACAAC 1452869 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || || | || |||| |||| || ||| Sbjct 1452870 ATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGGC 1452917 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || || || || ||| ||| Sbjct 2587958 ATGCAGATCTTCGTGAAGACGCTCACTGGCAAGACAATCACCCTTGAGGTTGAACCCAGT 2588017 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || || || Sbjct 2588018 GACACCATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2588077 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || || || || ||| | | ||||||| || ||| Sbjct 2588078 CAGAGGTTGATCTTTGCTGGCAAGCAACTAGAAGATGGCCGCACACTGTCAGACTACAAC 2588137 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || |||||||| || || || || | || |||| |||| || ||| Sbjct 2588138 ATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGTGGTGGC 2588185 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 2587502 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 2587561 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || || || Sbjct 2587562 GACACTATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2587621 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| ||||| || || |||||||| ||| | | | ||||| || ||| Sbjct 2587622 CAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACGCTCTCAGACTACAAC 2587681 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 2587682 ATCCAGAAGGAGTCCACCCTCCATCTTG 2587709 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || ||||| || || ||| | || || || || || | | Sbjct 1453602 ATGCAAATATTTGTGAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAGT 1453661 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || || || |||| || | ||| || || ||||||||||| || ||||| || || Sbjct 1453662 GATACTGTTGAGAACGTGAAGGCCAAA-ATTCAGGACAAAGAAGGCATTCCTCCTGACCA 1453720 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||| ||||| || ||||| ||||| ||| | | | | || || || || Sbjct 1453721 ACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGACGGACCCTCTCTGACTACAA 1453780 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || || || | || |||| |||| || ||| Sbjct 1453781 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGGC 1453829 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || | || Sbjct 1454058 ATGCAGATCTTTGTAAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGGGCAGT 1454117 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| || || | || || || ||||| ||||| ||||| || || || ||||| Sbjct 1454118 GACACTGTTGAGAATGTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 1454177 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || || | || ||| | | | | || || || ||| Sbjct 1454178 CAGAGGTTGATCTTTGCTGGTAAGCAATTAGAAGATGGACGCACCTTATCTGACTACAAC 1454237 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| || || || || || | || |||| |||| || ||| Sbjct 1454238 ATCCAAAAAGAGTCTACCCTTCATCTTGTCCTGCGTCTGCGAGGTGGC 1454285 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 2590401 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 2590342 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || || || Sbjct 2590341 GACACTATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATTCCACCTGACCAG 2590282 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || |||||||| || | | | || || || ||| Sbjct 2590281 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACTCTCTCTGACTACAAC 2590222 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 2590221 ATCCAGAAGGAGTCCACCCTCCATCTTG 2590194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || ||| ||| Sbjct 2587730 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATAACCCTTGAGGTTGAACCCAGT 2587789 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || || || || || Sbjct 2587790 GACACCATCGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2587849 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || || || || ||| | | | ||||| || ||| Sbjct 2587850 CAGAGGTTGATCTTTGCTGGCAAGCAACTAGAAGATGGCCGTACACTATCAGACTACAAC 2587909 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 2587910 ATCCAGAAGGAGTCAACTCTCCATCTTG 2587937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449687402217560