Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_022090.1 Length=134643 Score E Sequences producing significant alignments: (Bits) Value seq8470 100 2e-16 seq23546 86.0 5e-12 >seq8470 Length=217 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 66489 GAAATTATGTTACCTAATAAAGAAGATTGGTCATTTGTATGTGACCTATCTAGTATGAAC 66548 |||||||||||||| || || || ||||| ||||| |||| |||||| || || || Sbjct 93 GAAATTATGTTACCATCCAATGACGAATGGTCGTTTGTCTGTGTCCTATCAAGCATAAAT 152 Query 66549 CTTGTTAAGTATGATGAATGGAAACACACGGATGCTGTAGAGACACTTGTTTACTTTTTA 66608 ||| | || ||||| |||||||| |||| ||||||||||| || | || || || ||| Sbjct 153 CTTTTGAACTATGACAAATGGAAAGACACCGATGCTGTAGAAACTATGGTGTATTTCTTA 212 Query 66609 GATGC 66613 ||||| Sbjct 213 GATGC 217 >seq23546 Length=320 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 63578 TTGATTGGATGTATGAAGATGGGGAACTAGAGTTCTTACCTAAGAAAGTAGTACAAGAAT 63637 |||||||||| | |||||| || ||| |||| ||||||||||| || ||| | |||| Sbjct 305 TTGATTGGATTTTTGAAGAAGGAGAATTAGATTTCTTACCTAAATCTGTTGTAAATGAAT 246 Query 63638 TTATTAAAAATAGGCTTAATAACTCTCTAGTAGCTGTTGGGTATACTAAACTTTTTGATG 63697 |||||||||| | |||| |||||| ||| | | || | | ||| | |||||| Sbjct 245 TTATTAAAAAGCGTTTTAACAACTCTTTAGAGAGTATCGGAATTGCCAAAATATTTGATA 186 Query 63698 TTGATGAAGAGTTACTAAGTGAAGTGTCATGGTTTGATGATGAAGTTATTAGTACTAAGT 63757 |||| || | || || || |||||||||||||||| |||| | || || Sbjct 185 TTGACCAAAAACTATTAGCACAAACCGAATGGTTTGATGATGAAATTATAGGAACAAA-- 128 Query 63758 TAACG--GACTTTTTATCTAAACGTTCTGTAAACTATA 63793 ||| |||||||| ||||| ||| | || |||| Sbjct 127 ACACGGCGACTTTTTTGTAAAACGCTCTATTAATTATA 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430536587345388