Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 143 2e-29
>seq1473
Length=2736273
Score = 143 bits (158), Expect = 2e-29
Identities = 171/230 (74%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||| | | |||||| || || | |||| ||||||||| ||||| ||||| ||
Sbjct 2587728 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 2587669
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || || || |||| | ||||||||| | ||
Sbjct 2587668 AGCGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGA 2587609
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| || |||||||| | ||||| |||||| || || || | ||| ||| ||| |
Sbjct 2587608 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGAC--ATTCTCAATAGTGTCACTGGGCTCAA 2587551
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || | ||| |||||||| || ||||||||||| |||||||||||||||
Sbjct 2587550 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 2587501
Score = 140 bits (154), Expect = 2e-28
Identities = 170/230 (74%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||| | | |||||| || || | || ||||||||| ||||| ||||| |||
Sbjct 2587956 CCACCCCTGAGACGCAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAT 2587897
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| | || |||| || |||||||| || || ||||||| | ||||||||| | ||
Sbjct 2587896 AGTGTACGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2587837
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| || |||||||| | ||||| |||||| || || || | ||| ||| || |
Sbjct 2587836 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGTTCAA 2587779
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| |||| |||||||||||| || ||||||||||| || ||||||||||||
Sbjct 2587778 CCTCAAGGGTTATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 2587729
Score = 140 bits (154), Expect = 2e-28
Identities = 170/230 (74%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||| | | |||||| || || | |||| ||||||||| ||||| ||||| ||
Sbjct 2590175 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2590234
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| | || ||||| ||||| || || ||||||| | |||||||| | ||
Sbjct 2590235 AGAGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGA 2590294
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| || |||||||| | ||||| |||||| || || || | ||| ||| ||| |
Sbjct 2590295 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGAC--ATTCTCAATAGTGTCACTGGGCTCAA 2590352
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || | ||| |||||||| || ||||||||||| |||||||||||||||
Sbjct 2590353 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 2590402
Score = 127 bits (140), Expect = 1e-24
Identities = 159/216 (74%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| || |||| ||| ||| || || ||||| ||||| |||| | |||| ||||
Sbjct 1454270 CAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGATAAGGTGCGTCCATC 1454211
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| | |||||| || || ||||||| | ||||| || | || | || ||||||||
Sbjct 1454210 TTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 1454151
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| ||||| || || || || | | ||| || ||||||| |||| ||| |||
Sbjct 1454150 CTGGATTTTAGCCTTCAC--ATTCTCAACAGTGTCACTGCCCTCGACCTCAAGGGTGATG 1454093
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||| || |||||||||||||||||||||||||||
Sbjct 1454092 GTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATG 1454057
Score = 127 bits (140), Expect = 1e-24
Identities = 159/216 (74%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| || || | |||| |||||| || ||||| ||||| || || |||| ||||
Sbjct 2588170 CAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGACAGTGTGCGGCCATC 2588111
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| |||||||| || || ||||||| | ||||||||| | || | || ||||||||
Sbjct 2588110 TTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 2588051
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| ||||| |||||| || || || | ||| ||| || || |||| ||| ||
Sbjct 2588050 CTGGATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATT 2587993
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||| || ||||| ||||| || ||||||||||||
Sbjct 2587992 GTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCATG 2587957
Score = 125 bits (138), Expect = 5e-24
Identities = 156/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| || || | |||| ||| ||||| ||||| ||||| || ||| |||| ||||
Sbjct 1452902 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 1452843
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||||||| || || || || |||| | |||||||| | || | || || |||||
Sbjct 1452842 TTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTC 1452783
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| ||||| ||||| | | | | ||| || |||| || |||| ||| |||||
Sbjct 1452782 CTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAACCTCAAGGGTGATGGT 1452723
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| || ||||||||||| |||||||||||||||
Sbjct 1452722 TTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 1452689
Score = 123 bits (136), Expect = 2e-23
Identities = 158/216 (73%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| || |||| || |||||| || ||||| || || || ||| | || ||||
Sbjct 1454954 CAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCAGAGAGGGTACGGCCATC 1454895
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || |||||||| || |||||||| | ||| ||||| | || | || ||||||||
Sbjct 1454894 TTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGGGGAATACCTTCCTTGTC 1454835
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| ||||| ||||| || || | | |||||||| || || |||| ||| |||
Sbjct 1454834 CTGGATTTTAGCCTTGAC--ATTCTCAACTGTATCATTGGCTTCAACCTCAAGGGTGATG 1454777
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||| || ||||||||||| ||||| | |||||||
Sbjct 1454776 GTCTTGCCAGTGAGGGTCTTCACAAACAACTGCATG 1454741
Score = 116 bits (128), Expect = 2e-21
Identities = 167/231 (72%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGT-GCTCTCCTTCTGAATGTTATAGTCCGA 34809
|| || ||||| | |||||| || |||| || ||| ||||| || ||||| ||||| ||
Sbjct 1454740 CCACCTCTCAAACGCAGGACAAGATGAAGAGTAGCT-TCCTTTTGGATGTTGTAGTCAGA 1454682
Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869
||| |||| ||| |||| || || || || |||||||| | || || | ||||
Sbjct 1454681 GAGGGTGCGATCACATCCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGGCGG 1454622
Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCG 34927
| || |||||||| || ||||| |||||| || || | | ||| || |||||
Sbjct 1454621 AATACCTTCCTTGTCTTTGATTTTGGCTTTGAC--ATTCTCAACAGTATCACTGCCCTCG 1454564
Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| |||| || || ||||| || || ||||| || |||||||||||||||
Sbjct 1454563 ACCTCAAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCATG 1454513
Score = 109 bits (120), Expect = 4e-19
Identities = 155/216 (72%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|| ||| || || | |||| ||||||||||||||| ||||| || ||| |||| ||||
Sbjct 1453358 CAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATC 1453299
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||||||| || || || || |||| | || ||||| | || | || || |||||
Sbjct 1453298 TTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC 1453239
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| ||||| || || || || | | ||| | |||| || |||| || | |
Sbjct 1453238 CTGGATTTTGGCCTTCAC--ATTCTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACG 1453181
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||| || || ||||||||||||||||||||||||
Sbjct 1453180 GTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATG 1453145
Score = 100 bits (110), Expect = 2e-16
Identities = 153/216 (71%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|| ||| || || | |||| ||||||||| ||||| ||||| || ||| ||| ||||
Sbjct 1453130 CAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGAGCGGCCATC 1453071
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||||||| || || || || |||| | || ||||| | || | || || |||||
Sbjct 1453070 TTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC 1453011
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| ||||| || || || || | | ||| | |||| || |||| || | |
Sbjct 1453010 CTGGATTTTGGCCTTCAC--ATTCTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACG 1452953
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||| || || ||||||||||||||||||||||||
Sbjct 1452952 GTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATG 1452917
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|| ||| || || | |||| ||||||||| ||||| ||||| || ||| |||| ||||
Sbjct 1453586 CAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 1453527
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| ||||| || || || || |||| | || ||||| | || | || || |||||
Sbjct 1453526 TTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC 1453467
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| ||||| || || | | | | ||| || |||| || || | ||| || ||
Sbjct 1453466 CTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAACCTCTAGGGTGATAGT 1453407
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| || ||||||||||| ||||| || ||||||
Sbjct 1453406 TTTGCCAGTGAGGGTCTTCACAAATATTTGCATG 1453373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325544436446363
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