Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1473 143 2e-29 >seq1473 Length=2736273 Score = 143 bits (158), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | |||||| || || | |||| ||||||||| ||||| ||||| || Sbjct 2587728 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 2587669 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || || |||| | ||||||||| | || Sbjct 2587668 AGCGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGA 2587609 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | ||||| |||||| || || || | ||| ||| ||| | Sbjct 2587608 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGAC--ATTCTCAATAGTGTCACTGGGCTCAA 2587551 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || ||||||||||| ||||||||||||||| Sbjct 2587550 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 2587501 Score = 140 bits (154), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | |||||| || || | || ||||||||| ||||| ||||| ||| Sbjct 2587956 CCACCCCTGAGACGCAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAT 2587897 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| || |||||||| || || ||||||| | ||||||||| | || Sbjct 2587896 AGTGTACGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2587837 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | ||||| |||||| || || || | ||| ||| || | Sbjct 2587836 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGTTCAA 2587779 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| |||||||||||| || ||||||||||| || |||||||||||| Sbjct 2587778 CCTCAAGGGTTATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 2587729 Score = 140 bits (154), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | |||||| || || | |||| ||||||||| ||||| ||||| || Sbjct 2590175 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2590234 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| | || ||||| ||||| || || ||||||| | |||||||| | || Sbjct 2590235 AGAGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGA 2590294 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | ||||| |||||| || || || | ||| ||| ||| | Sbjct 2590295 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGAC--ATTCTCAATAGTGTCACTGGGCTCAA 2590352 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || ||||||||||| ||||||||||||||| Sbjct 2590353 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 2590402 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| || |||| ||| ||| || || ||||| ||||| |||| | |||| |||| Sbjct 1454270 CAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGATAAGGTGCGTCCATC 1454211 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || | |||||| || || ||||||| | ||||| || | || | || |||||||| Sbjct 1454210 TTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 1454151 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| || || || || | | ||| || ||||||| |||| ||| ||| Sbjct 1454150 CTGGATTTTAGCCTTCAC--ATTCTCAACAGTGTCACTGCCCTCGACCTCAAGGGTGATG 1454093 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || ||||||||||||||||||||||||||| Sbjct 1454092 GTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATG 1454057 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| || || | |||| |||||| || ||||| ||||| || || |||| |||| Sbjct 2588170 CAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGACAGTGTGCGGCCATC 2588111 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||| || || ||||||| | ||||||||| | || | || |||||||| Sbjct 2588110 TTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 2588051 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| |||||| || || || | ||| ||| || || |||| ||| || Sbjct 2588050 CTGGATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATT 2587993 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || ||||| ||||| || |||||||||||| Sbjct 2587992 GTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCATG 2587957 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| || || | |||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 1452902 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 1452843 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||||||| || || || || |||| | |||||||| | || | || || ||||| Sbjct 1452842 TTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTC 1452783 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| ||||| | | | | ||| || |||| || |||| ||| ||||| Sbjct 1452782 CTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAACCTCAAGGGTGATGGT 1452723 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||||||||| ||||||||||||||| Sbjct 1452722 TTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 1452689 Score = 123 bits (136), Expect = 2e-23 Identities = 158/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| || |||| || |||||| || ||||| || || || ||| | || |||| Sbjct 1454954 CAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCAGAGAGGGTACGGCCATC 1454895 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||| || |||||||| | ||| ||||| | || | || |||||||| Sbjct 1454894 TTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGGGGAATACCTTCCTTGTC 1454835 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| ||||| || || | | |||||||| || || |||| ||| ||| Sbjct 1454834 CTGGATTTTAGCCTTGAC--ATTCTCAACTGTATCATTGGCTTCAACCTCAAGGGTGATG 1454777 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || ||||||||||| ||||| | ||||||| Sbjct 1454776 GTCTTGCCAGTGAGGGTCTTCACAAACAACTGCATG 1454741 Score = 116 bits (128), Expect = 2e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGT-GCTCTCCTTCTGAATGTTATAGTCCGA 34809 || || ||||| | |||||| || |||| || ||| ||||| || ||||| ||||| || Sbjct 1454740 CCACCTCTCAAACGCAGGACAAGATGAAGAGTAGCT-TCCTTTTGGATGTTGTAGTCAGA 1454682 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| |||| ||| |||| || || || || |||||||| | || || | |||| Sbjct 1454681 GAGGGTGCGATCACATCCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGGCGG 1454622 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCG 34927 | || |||||||| || ||||| |||||| || || | | ||| || ||||| Sbjct 1454621 AATACCTTCCTTGTCTTTGATTTTGGCTTTGAC--ATTCTCAACAGTATCACTGCCCTCG 1454564 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||| || || ||||| || || ||||| || ||||||||||||||| Sbjct 1454563 ACCTCAAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCATG 1454513 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | |||| ||||||||||||||| ||||| || ||| |||| |||| Sbjct 1453358 CAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATC 1453299 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||||||| || || || || |||| | || ||||| | || | || || ||||| Sbjct 1453298 TTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC 1453239 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| || || || || | | ||| | |||| || |||| || | | Sbjct 1453238 CTGGATTTTGGCCTTCAC--ATTCTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACG 1453181 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || |||||||||||||||||||||||| Sbjct 1453180 GTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATG 1453145 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | |||| ||||||||| ||||| ||||| || ||| ||| |||| Sbjct 1453130 CAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGAGCGGCCATC 1453071 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||||||| || || || || |||| | || ||||| | || | || || ||||| Sbjct 1453070 TTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC 1453011 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| || || || || | | ||| | |||| || |||| || | | Sbjct 1453010 CTGGATTTTGGCCTTCAC--ATTCTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACG 1452953 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || |||||||||||||||||||||||| Sbjct 1452952 GTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATG 1452917 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | |||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 1453586 CAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 1453527 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || || || || |||| | || ||||| | || | || || ||||| Sbjct 1453526 TTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC 1453467 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || | | | | ||| || |||| || || | ||| || || Sbjct 1453466 CTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAACCTCTAGGGTGATAGT 1453407 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||||||||| ||||| || |||||| Sbjct 1453406 TTTGCCAGTGAGGGTCTTCACAAATATTTGCATG 1453373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325544436446363