Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1473 159 3e-34 >seq1473 Length=2736273 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| |||||| || | ||| || ||||| ||||| || ||||| || || | Sbjct 1452461 TCCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 1452402 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || | |||||||||||| | ||||| ||||||||||| || || Sbjct 1452401 GAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGG 1452342 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| || ||||| || | ||| ||| ||| | || ||||||||| ||| || Sbjct 1452341 AATACCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAAC 1452282 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || |||||||||| ||| || ||||| || |||||||| Sbjct 1452281 CTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTT 1452231 Score = 158 bits (174), Expect = 9e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| || | ||| || ||||| ||||| || ||||| || || | Sbjct 1452916 CCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 1452857 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || ||||||||||||||| ||||||| || ||||| || || ||| Sbjct 1452856 AGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGA 1452797 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | ||| |||||| |||| ||||||||| || || Sbjct 1452796 ATGCCTTCTTTGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAACC 1452737 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || ||||||||||| | ||| || ||||| |||||||| Sbjct 1452736 TCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 1452690 Score = 156 bits (172), Expect = 3e-33 Identities = 175/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||||||||| || | |||||| || | ||| ||||| ||||| || || | Sbjct 1454740 CCACCTCTCAAACGCAGGACAAGATGAAGAGTAGCTTCCTTTTGGATGTTGTAGTCAGAG 1454681 Query 29620 ATGGTGCGAGAATCATCG-AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||||| | |||| || |||||||||||| | |||| || || |||| ||||| Sbjct 1454680 AGGGTGCGATCA-CATCCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGGCGG 1454622 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| || ||||||| | ||||| | ||||||| | || ||||| ||| || | Sbjct 1454621 AATACCTTCCTTGTCTT-TGATTTTGGCTTTGACATTCTCAACAGTATCACTGCCCTCGA 1454563 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| || || |||||||||| |||||| ||||| |||||||| Sbjct 1454562 CCTCAAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 1454514 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||| || | ||| || ||||| || || || ||||| || || | Sbjct 1453600 CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1453541 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| |||||||||||||||||| ||||||| || || || || || ||| Sbjct 1453540 AGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453481 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | ||| || ||| |||| ||||||||| || || Sbjct 1453480 ATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAACC 1453421 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||||||||||||| | ||| || |||||||| ||||| Sbjct 1453420 TCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 1453374 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| || | ||| || |||||||| || || ||||| || || | Sbjct 1454056 CCACCTCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 1453997 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || ||||||||||||||| ||||||| || || || || || ||| Sbjct 1453996 AGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453937 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || ||| | || ||||||||| || ||| Sbjct 1453936 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAACT 1453877 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| | |||||| |||||||||||||| Sbjct 1453876 TCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||| || | ||| || ||||| || || |||||||| || || | Sbjct 1453372 CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1453313 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || ||||||||||||||| ||||||| || || || || || ||| Sbjct 1453312 AGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453253 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | ||| || ||| | || || |||||| || || Sbjct 1453252 ATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACC 1453193 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| | || |||||||||| ||| || ||||| |||||||| Sbjct 1453192 TCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1453146 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| || | ||| || ||||| || || || ||||| || || | Sbjct 1453828 CCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1453769 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || ||||||||||||||| ||||||| || || || || || ||| Sbjct 1453768 AGGGTCCGTCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453709 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || |||||||| || |||||| | || || | || ||||| ||| || || Sbjct 1453708 ATGCCTTCTTTGTCCTG-AATTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAAC 1453650 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| | ||| |||||||||| ||| || |||||||| ||||| Sbjct 1453649 CTCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTCACAAATATTTGCAT 1453602 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| || | ||| || || |||||||| || ||||| ||||| | Sbjct 1455196 CCACCTCGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAG 1455137 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || | ||||||||||||| ||||||| || || ||||| || ||| Sbjct 1455136 AGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGA 1455077 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| ||| ||| | || || |||||| || || Sbjct 1455076 ATTCCTTCCTTGTCCTGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACC 1455017 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||| | ||| || ||||| |||||||| Sbjct 1455016 TCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTGCAT 1454970 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||| || | ||| || ||||| || || || ||||| || || | Sbjct 1453144 CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1453085 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || ||||||||||||||| ||||||| || || || || || ||| Sbjct 1453084 AGGGAGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453025 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | ||| || ||| | || || |||||| || || Sbjct 1453024 ATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACC 1452965 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| | || |||||||||| ||| || ||||| |||||||| Sbjct 1452964 TCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452918 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||||||||| || || || ||||| || || || ||||| ||||| | Sbjct 1454512 CCACCTCTCAAACGCAGGACATGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAG 1454453 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || ||| | ||||| ||| ||||||| || ||||| || || ||| Sbjct 1454452 AGGGTTTGGTCATCTTCCAGTGGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGGGGA 1454393 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || |||||| | || ||||||||| | || || Sbjct 1454392 ATGCCTTCCTTGTCTTGGATTTGGGCCTTGACATTCTCAACAGTGTCACTAGTCTCGACC 1454333 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || | | ||||| || | ||| || |||||||||||||| Sbjct 1454332 TCAAGGGTGACGGGCTTGCCGGTAAGGGTCTTCACAAATATCTGCAT 1454286 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||| || | ||| || ||||| || || || ||||| || || | Sbjct 1452688 CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1452629 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | |||||||||||| ||||||| || || || || || ||| Sbjct 1452628 AGGGTGCGGCCATCTTCCAATTGTTTGCCAGCGAATATCAACCTCTGTTGGTCAGGTGGA 1452569 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||| || | ||| || | | | || ||||| ||| || || Sbjct 1452568 ATGCCTTCCTTGTACTGGATTTTGGCCTTCATATTCTCAACAGTATCACTCCCCTCAACC 1452509 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| | ||| |||||||||| ||| || ||||| ||||||||| Sbjct 1452508 TCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATT 1452461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385043720255157