Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq809 113 3e-19 >seq809 Length=886213 Score = 113 bits (124), Expect = 3e-19 Identities = 114/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| || | |||||| |||||||||||||| || || | || |||| Sbjct 477108 TTTTTGTCCAAGCCATATGCGATAGCAGCTGCAGTTGGTTCATTGATGATACGCAGAACA 477167 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| ||||||||||||| || || || | ||| ||||| || || || Sbjct 477168 TTGAGCCCAGAGATTGTTCCTGCATCTTTTGTAGCCTGGCGTTGGGAATCATTGAAGTAG 477227 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 || || || |||||||| |||| |||| Sbjct 477228 GCGGGCACCGTAATAACAGCAT-TGTT 477253 Score = 100 bits (110), Expect = 2e-15 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||||| || || | |||| | |||| ||||||||||| || ||||| Sbjct 478781 CAAAGACTGTGTTGGTGGGGTTCATTGCAACCTGATTCTTGGCTGCATCACCTATCAGCC 478840 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || || ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 478841 TCTCGGTGTCTGTGAAGGCCACATAACTAGGTGTGGTCCTGTTTCCTTGGTCATTTGCAA 478900 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| || ||||||| ||||| | || || || | ||||| Sbjct 478901 TGATTTCAACTTTTCCATGCTGGAATACACCAACACAGGAGTAGGTGGTCCCCAGATCAA 478960 Query 282870 TACCAATAGC 282879 |||||| ||| Sbjct 478961 TACCAACAGC 478970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738795347255202