Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq22746 165 3e-35 seq23299 87.8 6e-12 >seq22746 Length=301 Score = 165 bits (182), Expect = 3e-35 Identities = 211/291 (73%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 188792 CAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCT 188851 ||||||| || ||| | || |||| | || | ||| || |||| || |||| || Sbjct 299 CAGGTAAGACTTTAATAGCAAAAACCATTGCAAAAATGCTAAATGTGCCATTAGCAATTG 240 Query 188852 CTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGC 188911 ||||| ||| | |||||||||||||| |||||||||||||| |||| | || Sbjct 239 TAGATGCTACTGTGCTTACAGAAGCTGGTTACGTAGGTGAAGATGTAGAAAGTATTTTAA 180 Query 188912 TTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATA 188971 ||||||| | |||||||| || ||| || | ||| ||| ||||| || ||||| | | Sbjct 179 CTCGTTTATTACAAGCAGCGGACTACAATCTAGAAAAAGCAGAACGAGGTATTGTTTTCA 120 Query 188972 TCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTAT 189031 | |||||| ||||||||||||| | ||| || | |||||||||| |||||||| | Sbjct 119 TAGATGAAATAGATAAAATTGCCCGCAAAAGCGATAATCCATCCATTACACGAGATGTTT 60 Query 189032 CTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTG 189082 |||| ||||| ||||| |||| | |||||| | | || || || |||| Sbjct 59 CTGGAGAAGGCGTACAACAAGGCCTTTTAAAACTTTTAGAGGGCACTGTTG 9 >seq23299 Length=314 Score = 87.8 bits (96), Expect = 6e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 411232 ATGGTGGTTGTAGCTCAATTGGTTAGAGCGCTAGATTGTGGATCTAGAGGTTGTGGGTTC 411291 ||||||||||||||||| ||||||||||||| |||||||| || |||||| | ||||| Sbjct 172 ATGGTGGTTGTAGCTCAGCTGGTTAGAGCGCTTGATTGTGGTTCAAGAGGTCGCCGGTTC 231 Query 411292 GATCCCCATCATCCACCC 411309 || ||| || ||||||| Sbjct 232 GAACCCGGTCTTCCACCC 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591148045551296