Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 152 1e-31
seq1476 105 1e-17
>seq1473
Length=2736273
Score = 152 bits (168), Expect = 1e-31
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| |||| || |||||| || | || || || ||||||||||| || || ||||||||
Sbjct 1455196 CCACCTCGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAG 1455137
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||||| |||||| |||||||| || | || |||||||| || ||
Sbjct 1455136 AGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGA 1455077
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
||||||||||| || || || || ||||| ||||| |||| ||| ||| | || ||
Sbjct 1455076 ATTCCTTCCTTGTCCTGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACC 1455017
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||| || ||||| || || | ||||| ||||| ||||||||
Sbjct 1455016 TCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTGCAT 1454970
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| |||| | |||||| || | || || |||| || || || || || ||||||||
Sbjct 1454968 CCACCTCGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCAGAG 1454909
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || |||||||| || |||||||||||||| || |||||||| || || ||
Sbjct 1454908 AGGGTACGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGGGGA 1454849
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || || || || || || ||||| |||| |||||||| | ||| ||
Sbjct 1454848 ATACCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCAACC 1454789
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| || | ||||| ||||| | ||||||
Sbjct 1454788 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAACAACTGCAT 1454742
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || || | |||||| || | || ||||| || || ||||| || || || || |||
Sbjct 2587956 CCACCCCTGAGACGCAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAT 2587897
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||||||||| || ||||||||||| | || || || ||||| ||
Sbjct 2587896 AGTGTACGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2587837
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || || || || ||||| ||||| || || || ||| | ||||| ||
Sbjct 2587836 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGTTCAACC 2587777
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||||| |||||||| || | ||||| || || ||||||||
Sbjct 2587776 TCAAGGGTTATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 2587730
Score = 141 bits (156), Expect = 2e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| ||||||| |||||| || | || || || || |||||||| || || || |||||
Sbjct 1452460 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 1452401
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| | ||||| ||||||||||| | ||||| ||||| |||||
Sbjct 1452400 AGGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGA 1452341
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || || || || ||||| ||||| |||| || ||| | ||| ||
Sbjct 1452340 ATACCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACC 1452281
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814
|| | || || |||||||| || | ||||| ||||| || |||||| ||
Sbjct 1452280 TCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTTT 1452230
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| |||| || |||||| || | || || || ||||| ||||| || || || |||||
Sbjct 1454056 CCACCTCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 1453997
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || ||||| |||||||| |||||||| || | || ||||| || |||||
Sbjct 1453996 AGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453937
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || || || || || || ||||| |||| || ||| | || |||
Sbjct 1453936 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAACT 1453877
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| || | || || ||||||||||||||
Sbjct 1453876 TCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || || | |||||| || | || || || || || ||||| || || || |||||
Sbjct 2590175 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2590234
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | ||||||||| || || || ||||||||||| | || || || || || ||
Sbjct 2590235 AGAGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGA 2590294
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || || || || ||||| ||||| ||||| || ||| | || || ||
Sbjct 2590295 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACC 2590354
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| || | ||||| ||||| ||||||||
Sbjct 2590355 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 2590401
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || |||||| || | || || || || || || || || || || || ||
Sbjct 2588184 CCACCACGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGAC 2588125
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||||||||| || ||||||||||| | || || || ||||| ||
Sbjct 2588124 AGTGTGCGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2588065
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || || || || ||||| ||||| ||||| || ||| | ||||| ||
Sbjct 2588064 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAACC 2588005
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| || | |||||| || || ||||||||
Sbjct 2588004 TCAAGGGTGATTGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 2587958
Score = 131 bits (144), Expect = 3e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| |||| || |||||| || | || || ||||| ||||| || || || || ||||||
Sbjct 1454284 CCACCTCGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAT 1454225
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
| | | || ||||||| ||| || ||||||||||| | || || ||||| || ||
Sbjct 1454224 AAGGTGCGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGA 1454165
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || || || || || || ||||| |||| || ||| | || ||
Sbjct 1454164 ATGCCTTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTCGACC 1454105
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| || | ||||||||||| ||||||||
Sbjct 1454104 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 1454058
Score = 131 bits (144), Expect = 3e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| |||||||||||||| || | || ||||||| ||| || || || || || |||||
Sbjct 1454740 CCACCTCTCAAACGCAGGACAAGATGAAGAGTAGCTTCCTTTTGGATGTTGTAGTCAGAG 1454681
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | | | | | || ||||| ||||||||||| || || || |||| || ||
Sbjct 1454680 AGGGTGCGATCACATCCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGGCGGA 1454621
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| |||| || || ||||| ||||| |||| |||||| | || ||
Sbjct 1454620 ATACCTTCCTTGTCTTTGATTTTGGCTTTGACATTCTCAACAGTATCACTGCCCTCGACC 1454561
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||| || |||||||| || | || || ||||| ||||||||
Sbjct 1454560 TCAAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 1454514
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| |||||||||||||| || ||| || || || || ||||| || || ||||||||
Sbjct 1454512 CCACCTCTCAAACGCAGGACATGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAG 1454453
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| || | ||||| ||| | || || ||||| || | || || || ||||| ||
Sbjct 1454452 AGGGTTTGGTCATCTTCCAGTGGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGGGGA 1454393
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| ||||| || | || || ||||| |||| || ||| ||| || ||
Sbjct 1454392 ATGCCTTCCTTGTCTTGGATTTGGGCCTTGACATTCTCAACAGTGTCACTAGTCTCGACC 1454333
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || | | |||||| || | ||||| ||||||||||||||
Sbjct 1454332 TCAAGGGTGACGGGCTTGCCGGTAAGGGTCTTCACAAATATCTGCAT 1454286
Score = 116 bits (128), Expect = 7e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| |||| || ||||| || | || || || || || ||||| || || || |||||
Sbjct 1453144 CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1453085
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | || ||||| |||||||| |||||||| || | || ||||| || |||||
Sbjct 1453084 AGGGAGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453025
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||| || || || || || || || ||||| |||| || ||| | || ||
Sbjct 1453024 ATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACC 1452965
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||| | |||||||| || | ||||||||||| ||||||||
Sbjct 1452964 TCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452918
Score = 116 bits (128), Expect = 7e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| |||| || ||||| || | || || || || || ||||| || || || || ||
Sbjct 1453372 CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1453313
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| |||||||| |||||||| || | || ||||| || |||||
Sbjct 1453312 AGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453253
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||| || || || || || || || ||||| |||| || ||| | || ||
Sbjct 1453252 ATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACC 1453193
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||| | |||||||| || | ||||||||||| ||||||||
Sbjct 1453192 TCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1453146
Score = 109 bits (120), Expect = 1e-18
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| |||| || ||||| || | || || || || || ||||| || || || |||||
Sbjct 1452688 CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1452629
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| | |||||| ||||| || || | || ||||| || || ||
Sbjct 1452628 AGGGTGCGGCCATCTTCCAATTGTTTGCCAGCGAATATCAACCTCTGTTGGTCAGGTGGA 1452569
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| | || || || || || | ||| |||| |||||| | || ||
Sbjct 1452568 ATGCCTTCCTTGTACTGGATTTTGGCCTTCATATTCTCAACAGTATCACTCCCCTCAACC 1452509
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||| | |||||||| || | ||||||||||| |||||||||
Sbjct 1452508 TCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATT 1452461
>seq1476
Length=595132
Score = 105 bits (116), Expect = 1e-17
Identities = 120/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208
||||| |||||||| | || || ||||| || |||||| | || ||||||||||||||
Sbjct 446646 GCATTGTGGTGGTATTTCATCTCCAAAGGCATCGAATACCTGGACACGGTGTTTTTCATC 446587
Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268
|| ||||||||||| | ||||| | ||| | ||||| || || || | || |||||
Sbjct 446586 CTGAGGAAAAAGTTCAGCCAGGTCACCTTTCTGCACGTTTACCACCACTGCACCATGTTC 446527
Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309
|| | | ||| | ||||| |||||| | || ||||| ||
Sbjct 446526 ACGCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACA 446486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981357010010803
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