Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq847 96.9 4e-15 >seq847 Length=1458800 Score = 96.9 bits (106), Expect = 4e-15 Identities = 198/289 (69%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 ||||||||||| || |||||||||||||||||||| ||| ||||| ||||| | || Sbjct 1108425 CGCACCATCTCCAGGTTGGTCTTAAGGGGAAAGTCCTGGCCACAGAGGTTAATGAAGTAC 1108484 Query 162700 TTCCACTTAACG-CTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758 |||||| ||| ||| | || ||| || | ||||| || ||||||||||| || Sbjct 1108485 TTCCACGCCACGCCTGTG-CCCAGCAGCTCGGACATGCAGTTAAGGTCGGCCTGGACCCG 1108543 Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818 ||| ||||| || |||||||| || |||| | || |||||| ||| || Sbjct 1108544 GGACCAGCCGGCGTAGACCACGCTCTCTCGCCGGCTGGCCAGGAACACATTGGGGAAGCA 1108603 Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAAC-ATCGGGTCCGCTTTCCTATCTACGTGTA 162877 || | | || || | ||| || || ||| ||| ||| || || || | Sbjct 1108604 GGAGGCCACGGCCGAGACTG-CAGCCAGCACTGACGGCGACGCCTTCAGGTCCACATGGA 1108662 Query 162878 CGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAA 162926 |||||| | |||||||| ||||||||||||| || | | |||||| Sbjct 1108663 TGCAGTAGATGTTCTGAGGAGCGTAGATGGCCCGGAGGAGACGCTCGAA 1108711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578161749339200