Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1148 291 8e-74 seq1473 95.1 1e-14 >seq1148 Length=2189075 Score = 291 bits (322), Expect = 8e-74 Identities = 1003/1535 (65%), Gaps = 38/1535 (2%) Strand=Plus/Plus Query 146893 TTGAC-CACTTGAAACTCGCCCGCCAGCACACGTC-TGAGATACACATTGCTAGTGAAAG 146950 ||||| |||| ||| |||||| | ||||| | | || | || | ||||| ||| | | Sbjct 533088 TTGACGCACTGGAA-CTCGCCGGAGAGCACCCTGCGTGTG-TATATGTTGCTGGTGTACG 533145 Query 146951 GCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010 ||||| ||||| || ||||| | || || || |||| ||||| |||||| ||||| Sbjct 533146 CCTCAATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATGGGCGCCA 533205 Query 147011 CCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCC 147070 || || |||| || ||||| | ||| || ||||| | | |||||||| Sbjct 533206 GCAGCAGGCTGTTTCTCACACCGTGCTTGGCGATCTTCTCCTTGAGTAATGTCCAGTCCC 533265 Query 147071 ACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCA-CTCCTCGACTGGCGGGA 147129 ||| || || ||| || | ||||||||| |||||||| | | ||| | ||| | ||| Sbjct 533266 ACAGCGGCGTGGGAATCCGCTGCCACATGTCATACTGGAGGATCCCCTTG-CTGACAGGA 533324 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGC-GCCAATTCACAGCTTGCCTCGAG 147188 ||| | | |||| |||| |||| || | || |||| || ||||| ||||| || Sbjct 533325 GAGCCCGGGTACGTCTCGTAGGGGCCGT-GCTCAGCGGCCAGCTCGCAGCTGGCCTCCAG 533383 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 ||| | ||||| | || ||| ||| || | || || | ||| || |||||| Sbjct 533384 CGCGGCGTAGTAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTC 533443 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | ||| |||| || | ||||| ||||||| ||||||| |||| ||| || || Sbjct 533444 AAAGGGCTGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGG 533503 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGCGATCAATAA 147367 || || |||| ||||| ||| ||| | | || |||| |||| || || | Sbjct 533504 CCGGTGGCGCATGTTGGAGCGCTGCGC-CTCAGGCACCGGGTAGTAGTTGATGTCGATGA 533562 Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAG 147427 || |||||||||| || | ||||| || | | || |||| ||| || || | Sbjct 533563 TCCTGTTGAGGTTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATG 533622 Query 147428 TCCCGTC-TTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCC 147486 | | || | ||||| ||| ||| | || | || || || ||||| |||||| Sbjct 533623 TGCGCTCGGGGGTGACGTA--CAT--GTTGAGCGCCACGGAGGCTAGGTTGCACACGGCC 533678 Query 147487 GTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACT 147546 ||| || | | |||| | ||||| || | ||||||||||||||| || ||| Sbjct 533679 ACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTG 533738 Query 147547 CCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 147606 |||| || ||||| ||||| || |||||||| || || ||| ||||||||||||| | Sbjct 533739 CCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTG 533798 Query 147607 CCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGCACCCGCTG 147665 || ||||| || | || | ||| | || || | ||| ||| |||| | | Sbjct 533799 CCCGTCTCTGTCTGAGACTCGATGAT-GGCGTACCACACCTGCTGGGCTTTCACCACCCG 533857 Query 147666 CCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCA 147725 | |||||||| || || || || |||||| ||||||||| || || |||| Sbjct 533858 CTTGACCCGGCCCTCCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCA 533917 Query 147726 ATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAAC 147785 ||| | ||||| || |||| || |||||||| |||||||| | || | || Sbjct 533918 CTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTAC 533977 Query 147786 GCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGAT--CGCGCGCTTTGCAA 147843 | ||| |||||||| || | ||| || || | | || | || |||| ||| Sbjct 533978 CCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGC-- 534035 Query 147844 TCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGT 147903 ||||| ||| |||| |||| | || | | ||||||| |||||| || Sbjct 534036 TCCTCTTTGCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGC 534095 Query 147904 TCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCGCACC 147960 || | ||| | ||| | || || ||| || || |||||||| || | |||| || Sbjct 534096 TCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCC 534155 Query 147961 ATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTG 148020 ||||||| | || |||| |||||| |||||||| | | |||| |||||| | Sbjct 534156 GTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCG 534215 Query 148021 ATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GCCGTACTT 148079 || | |||||| || || | | || ||||| ||||| || |||| | || Sbjct 534216 ATGTAGCTGCCAGTGGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCG-ATTT 534274 Query 148080 TGATATGGCAGCGCAATCGCCCAA---TGTCGTGTAGATGCCGTCGATGCTGTCGTTTTT 148136 || ||| || || | || | |||| ||||||||| ||||||||||||| || Sbjct 534275 GGAGATGAGGGCACACT-GCTTGAGCGTGTC--GTAGATGCCATCGATGCTGTCGTCCTT 534331 Query 148137 GACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG---CGTTCCCGCCGAGAAAAG 148193 | | | |||| || || ||| || || ||| || || || |||||| Sbjct 534332 CATGGCTAGCAGGAAGCAGCTGGACAACTGTGG---CCGGTTGGTGCCAGCGTTGAAAAG 534388 Query 148194 GGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTC 148253 ||||| |||||||| ||| || | | | || | ||||||||||| ||| | Sbjct 534389 AGTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGC 534448 Query 148254 TTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 || | | ||||||| ||||||| ||| || ||||| ||||||||||| || || || Sbjct 534449 ATCCACGCGCGCGCCGTGGATGCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTC 534508 Query 148314 GGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTA 148373 || || | |||||||||||| ||||| || ||||| ||| | |||||| | Sbjct 534509 TGCCACCTTGCCGTTGATCTTGAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAA 534568 Query 148374 CTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 ||||| || || | ||||| |||||||| Sbjct 534569 ATTGTAGGAGAAGTCGCGGTCGTAGATGATGGCCG 534603 >seq1473 Length=2736273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| || | ||| | | | ||||| || || ||||||||||| | ||| Sbjct 1453594 CGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 1453535 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||||||||| ||||| || | | | || | | |||||| || ||||| |||||| Sbjct 1453534 CGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCT 1453475 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 ||||| || |||||| |||| | ||||||||| || | ||| || || | Sbjct 1453474 TCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAACCTCTAGG 1453415 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||||| ||||| || || || | || || |||||| Sbjct 1453414 GTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCATG 1453373 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| || | ||| | | | ||||| || ||||||||||||||| | ||| Sbjct 1453366 CGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTG 1453307 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| || ||||| || | | | || | | |||||| || ||||| |||||| Sbjct 1453306 CGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCT 1453247 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 ||||| || ||||| |||| | || || || || || ||| || || | Sbjct 1453246 TCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACCTCAAGA 1453187 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||| || || |||| || ||||||||| Sbjct 1453186 GTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATG 1453145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476388521289720