Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1473 111 1e-19 >seq1473 Length=2736273 Score = 111 bits (122), Expect = 1e-19 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || || || || || || ||||| Sbjct 1453565 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAA 1453506 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG--CTTCAGA 35662 |||||||| ||| ||||| | ||||| || || |||||| ||| ||||| ||||| | Sbjct 1453505 TATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCC-TGAA-TTTTGACCTTCACA 1453448 Query 35663 GTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 || |||| ||||| || || ||||| | ||||| ||||| || || | || ||| Sbjct 1453447 TTTTCCACAGTGTCACTGTCCTCAACCTCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTC 1453388 Query 35723 ACAAATATCTGCAT 35736 |||||||| ||||| Sbjct 1453387 ACAAATATTTGCAT 1453374 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || |||| |||||||||||||| ||||| Sbjct 2590210 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCTTCCAGCTGCTTACCAGCAAA 2590269 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 ||||||| ||||||||| | |||| || ||||||||| ||| ||| || || | | Sbjct 2590270 GATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACAT 2590328 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| || | || ||||| | ||||| || || || || | || |||| Sbjct 2590329 TCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 2590388 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 2590389 CAAAGATCTGCAT 2590401 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| | ||| || | || ||||| || || || ||||| Sbjct 1453337 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAA 1453278 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||||||| ||| ||||| | ||||| || || |||||| ||| || ||||| | | Sbjct 1453277 TATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATT 1453218 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | || ||||| ||| || ||||| | |||| || || || || | || || || Sbjct 1453217 CTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTAC 1453158 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1453157 AAAGATCTGCAT 1453146 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || |||||||||||||| ||||| Sbjct 2587693 CTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATCTTCCAGCTGCTTACCAGCAAA 2587634 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 ||||||| ||||||||| | |||| || ||||||||| ||| ||| || || | | Sbjct 2587633 AATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACAT 2587575 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| || | || ||||| | ||||| || || || || | || |||| Sbjct 2587574 TCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 2587515 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 2587514 CAAAGATCTGCAT 2587502 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | || || | || ||||| || || || |||||| Sbjct 1454020 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAAT 1453961 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||| ||||| | ||||| || ||||||||| ||| || ||||| | | Sbjct 1453960 ATCAACCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 1453901 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | || ||||| || || || || | ||||| || || || || | ||||||||| Sbjct 1453900 TCAACAGTGTCACTTCCCTCAACTTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACA 1453841 Query 35726 AATATCTGCAT 35736 ||||||||||| Sbjct 1453840 AATATCTGCAT 1453830 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | ||| || | || ||||| || || || ||||| Sbjct 1452881 CTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAA 1452822 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||||||| ||||||||| | ||||| || || |||||| || || ||| | | | Sbjct 1452821 TATCAACCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGAATTTTCACCTTGACATT 1452762 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||||| || || ||||| | ||||| ||||| || || | || ||||| Sbjct 1452761 TTCAACAGTGTCACTGTCCTCAACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCAC 1452702 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1452701 AAAGATCTGCAT 1452690 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | |||| | || || ||||| |||| || ||||| Sbjct 1454477 CTCCTTCTGGATGTTGTAATCAGAGAGGGTTTGGTCATCTTCCAGTGGCTTGCCGGCAAA 1454418 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||||||| ||||||||| | |||| || |||||||| ||| | ||| | | | Sbjct 1454417 TATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATTTGGGCCTTGACATT 1454358 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | || ||||| || | || ||||| | |||| | || || || | || ||||| Sbjct 1454357 CTCAACAGTGTCACTAGTCTCGACCTCAAGGGTGACGGGCTTGCCGGTAAGGGTCTTCAC 1454298 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 1454297 AAATATCTGCAT 1454286 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| |||| | || || | ||| | |||| ||||||||| ||||||||||| | Sbjct 1454968 CCACCTCGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCAGAG 1454909 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || ||||| |||| || || ||||| | ||| Sbjct 1454908 AGGGTACGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGGGGA 1454849 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| ||| || ||| | | | | || || || | | ||| ||| Sbjct 1454848 ATACCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCAACC 1454789 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | || |||||||| | |||||| Sbjct 1454788 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAACAACTGCAT 1454742 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || ||||| || || || ||||| Sbjct 1453109 CTCCTTCTGGATGTTGTAGTCAGAGAGGGAGCGGCCATCTTCCAGTTGTTTGCCAGCAAA 1453050 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||||||| ||| ||||| | ||||| || || |||||| ||| || ||||| | | Sbjct 1453049 TATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATT 1452990 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | || ||||| ||| || ||||| | |||| || || || || | || || || Sbjct 1452989 CTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTAC 1452930 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1452929 AAAGATCTGCAT 1452918 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || ||||| || || || ||||| Sbjct 1453793 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTCCGTCCATCTTCCAGTTGTTTGCCAGCAAA 1453734 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 |||||||| ||| ||||| | ||||| || || |||||| ||| ||| || |||| Sbjct 1453733 TATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCC-TGAATTTTGGCCTTCACGT 1453675 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | || || || ||| || ||||| | |||| || || || || | || |||| Sbjct 1453674 TCTCAACAGTATCACTCCCCTCAACCTCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTCA 1453615 Query 35724 CAAATATCTGCAT 35736 ||||||| ||||| Sbjct 1453614 CAAATATTTGCAT 1453602 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || ||||||||||| | | || || | || || | || || || |||||| Sbjct 1455160 TCTTTCTGGATGTTGTAATCAGAGAGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAAT 1455101 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||||| ||| || || | |||| | ||||||||| ||| ||| || |||| | | Sbjct 1455100 ATCAACCTCTGTTGATCAGGGGGAATTCCTTCCTTGTCCTGGAT-TTTGGCTTTCACATT 1455042 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | |||||||| || || ||||| | ||||| || ||||| || | || ||||| Sbjct 1455041 CTCAACCGTGTCACTGTCCTCAACCTCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCAC 1454982 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1454981 AAAAATCTGCAT 1454970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450582983595160