Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 111 1e-19
>seq1473
Length=2736273
Score = 111 bits (122), Expect = 1e-19
Identities = 143/194 (74%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | ||| || | || || || || || || |||||
Sbjct 1453565 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAA 1453506
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG--CTTCAGA 35662
|||||||| ||| ||||| | ||||| || || |||||| ||| ||||| ||||| |
Sbjct 1453505 TATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCC-TGAA-TTTTGACCTTCACA 1453448
Query 35663 GTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722
|| |||| ||||| || || ||||| | ||||| ||||| || || | || |||
Sbjct 1453447 TTTTCCACAGTGTCACTGTCCTCAACCTCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTC 1453388
Query 35723 ACAAATATCTGCAT 35736
|||||||| |||||
Sbjct 1453387 ACAAATATTTGCAT 1453374
Score = 111 bits (122), Expect = 1e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | || || |||| |||||||||||||| |||||
Sbjct 2590210 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCTTCCAGCTGCTTACCAGCAAA 2590269
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663
||||||| ||||||||| | |||| || ||||||||| ||| ||| || || | |
Sbjct 2590270 GATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACAT 2590328
Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
| | | ||||| || | || ||||| | ||||| || || || || | || ||||
Sbjct 2590329 TCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 2590388
Query 35724 CAAATATCTGCAT 35736
|||| ||||||||
Sbjct 2590389 CAAAGATCTGCAT 2590401
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| |||| | ||| || | || ||||| || || || |||||
Sbjct 1453337 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAA 1453278
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||||||| ||| ||||| | ||||| || || |||||| ||| || ||||| | |
Sbjct 1453277 TATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATT 1453218
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| || ||||| ||| || ||||| | |||| || || || || | || || ||
Sbjct 1453217 CTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTAC 1453158
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 1453157 AAAGATCTGCAT 1453146
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | || || | || |||||||||||||| |||||
Sbjct 2587693 CTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATCTTCCAGCTGCTTACCAGCAAA 2587634
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663
||||||| ||||||||| | |||| || ||||||||| ||| ||| || || | |
Sbjct 2587633 AATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACAT 2587575
Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
| | | ||||| || | || ||||| | ||||| || || || || | || ||||
Sbjct 2587574 TCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 2587515
Query 35724 CAAATATCTGCAT 35736
|||| ||||||||
Sbjct 2587514 CAAAGATCTGCAT 2587502
Score = 105 bits (116), Expect = 6e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| || | | || || | || ||||| || || || ||||||
Sbjct 1454020 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAAT 1453961
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||||| ||| ||||| | ||||| || ||||||||| ||| || ||||| | |
Sbjct 1453960 ATCAACCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 1453901
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| || ||||| || || || || | ||||| || || || || | |||||||||
Sbjct 1453900 TCAACAGTGTCACTTCCCTCAACTTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACA 1453841
Query 35726 AATATCTGCAT 35736
|||||||||||
Sbjct 1453840 AATATCTGCAT 1453830
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || |||||||| || | | ||| || | || ||||| || || || |||||
Sbjct 1452881 CTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAA 1452822
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||||||| ||||||||| | ||||| || || |||||| || || ||| | | |
Sbjct 1452821 TATCAACCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGAATTTTCACCTTGACATT 1452762
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | || ||||| || || ||||| | ||||| ||||| || || | || |||||
Sbjct 1452761 TTCAACAGTGTCACTGTCCTCAACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCAC 1452702
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 1452701 AAAGATCTGCAT 1452690
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||||||||| | | |||| | || || ||||| |||| || |||||
Sbjct 1454477 CTCCTTCTGGATGTTGTAATCAGAGAGGGTTTGGTCATCTTCCAGTGGCTTGCCGGCAAA 1454418
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||||||| ||||||||| | |||| || |||||||| ||| | ||| | | |
Sbjct 1454417 TATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATTTGGGCCTTGACATT 1454358
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| || ||||| || | || ||||| | |||| | || || || | || |||||
Sbjct 1454357 CTCAACAGTGTCACTAGTCTCGACCTCAAGGGTGACGGGCTTGCCGGTAAGGGTCTTCAC 1454298
Query 35725 AAATATCTGCAT 35736
||||||||||||
Sbjct 1454297 AAATATCTGCAT 1454286
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||||| |||| | || || | ||| | |||| ||||||||| ||||||||||| |
Sbjct 1454968 CCACCTCGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCAGAG 1454909
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || || |||||||| || ||||| |||| || || ||||| | |||
Sbjct 1454908 AGGGTACGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGGGGA 1454849
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||||||| ||| || ||| | | | | || || || | | ||| |||
Sbjct 1454848 ATACCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCAACC 1454789
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || || || | || |||||||| | ||||||
Sbjct 1454788 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAACAACTGCAT 1454742
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | || || | || ||||| || || || |||||
Sbjct 1453109 CTCCTTCTGGATGTTGTAGTCAGAGAGGGAGCGGCCATCTTCCAGTTGTTTGCCAGCAAA 1453050
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||||||| ||| ||||| | ||||| || || |||||| ||| || ||||| | |
Sbjct 1453049 TATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATT 1452990
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| || ||||| ||| || ||||| | |||| || || || || | || || ||
Sbjct 1452989 CTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTAC 1452930
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 1452929 AAAGATCTGCAT 1452918
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | ||| || | || ||||| || || || |||||
Sbjct 1453793 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTCCGTCCATCTTCCAGTTGTTTGCCAGCAAA 1453734
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663
|||||||| ||| ||||| | ||||| || || |||||| ||| ||| || ||||
Sbjct 1453733 TATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCC-TGAATTTTGGCCTTCACGT 1453675
Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
| | || || || ||| || ||||| | |||| || || || || | || ||||
Sbjct 1453674 TCTCAACAGTATCACTCCCCTCAACCTCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTCA 1453615
Query 35724 CAAATATCTGCAT 35736
||||||| |||||
Sbjct 1453614 CAAATATTTGCAT 1453602
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| || || ||||||||||| | | || || | || || | || || || ||||||
Sbjct 1455160 TCTTTCTGGATGTTGTAATCAGAGAGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAAT 1455101
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664
||||||| ||| || || | |||| | ||||||||| ||| ||| || |||| | |
Sbjct 1455100 ATCAACCTCTGTTGATCAGGGGGAATTCCTTCCTTGTCCTGGAT-TTTGGCTTTCACATT 1455042
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| |||||||| || || ||||| | ||||| || ||||| || | || |||||
Sbjct 1455041 CTCAACCGTGTCACTGTCCTCAACCTCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCAC 1454982
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 1454981 AAAAATCTGCAT 1454970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450582983595160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |