Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq19548 89.7 6e-13 seq30401 87.8 2e-12 >seq19548 Length=251 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 180061 GTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCT 180120 |||| ||||| || ||| || || | | || ||||||||||| || ||||| || | Sbjct 251 GTGCATACGACTTTGTATCACAAGAATTACGTGCTGCAGAAGATCCAGAATTTGAAACAT 192 Query 180121 TCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATC 180180 |||| || || || ||| | | || ||||| | ||||||||| ||||| || |||| Sbjct 191 TCTATACAAAAAATATTTTATTAAACGAAGGTATTCGTGCATGGATGGCAGCACAAGATC 132 Query 180181 AACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 |||||||||| || |||||||| || || || | ||| | || || || Sbjct 131 AACCACATGAAAACTTTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGC 80 >seq30401 Length=595 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 156949 TGCGGGTGTAGCTCAGT-GGTAGAGCGTCAGTTTTCCAAACTGAATGTCGTCGGTTCAAG 157007 |||||| |||||||||| ||||||||||||| |||||| |||||||||| |||||| | Sbjct 574 TGCGGGAGTAGCTCAGTTGGTAGAGCGTCAGCCTTCCAAGCTGAATGTCGCCGGTTCGAA 515 Query 157008 TCCGATCTCCCGCTTTAA 157025 ||| ||||||||| ||| Sbjct 514 CCCGGTCTCCCGCTCTAA 497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605726464739760