Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1148 280 2e-70 seq28210 113 6e-20 seq354 98.7 1e-15 seq1486 84.2 3e-11 >seq1148 Length=2189075 Score = 280 bits (310), Expect = 2e-70 Identities = 1214/1913 (63%), Gaps = 15/1913 (1%) Strand=Plus/Plus Query 68680 CTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACT 68739 ||||| || | | | | || || ||||| || || || || || || || | ||| Sbjct 533058 CTCTCAGTGAGATCCTTCAGTAGGTGCGGGTTGACGCACTGGAACTCGCCGGAGAGCACC 533117 Query 68740 CTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGA 68799 || || ||||| || || ||||| || | || | || || || || || || || || Sbjct 533118 CTGCGTGTGTATATGTTGCTGGTGTACGCCTCAATGGACTCGTTGTTGCCAAGGATCTGC 533177 Query 68800 GCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATG 68859 ||||| || || || ||||| || |||| || | || ||||| | ||| || | | Sbjct 533178 GCAGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCTGTTTCTCACACCGTGCTTGGCG 533237 Query 68860 ATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCG 68919 || || || || || | |||| ||||| || | || | | ||| | || Sbjct 533238 ATCTTCTCCTTGAGTAATGTCCAGTCCCACAGCGGCGTGGGAATCCGCTGCCACATGTCA 533297 Query 68920 TATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGT 68979 || || || || || || || || || || || || || || || || | || Sbjct 533298 TACTGGAGGATCCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAGGGGCCGTGCTCA 533357 Query 68980 TCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 69039 | || || || || || ||||| | || |||| || | || ||||| |||| || Sbjct 533358 GCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAGTAGAGAGTCTCGAAGATCTGAATA 533417 Query 69040 TTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCC 69099 ||||| ||| || || | || || || || | | | ||||| || || || ||| Sbjct 533418 TTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCTGCCGCATGAGAATGAAGGCGTCGGCC 533477 Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159 | ||||| || || || || || || | || | | | || || | | || || || Sbjct 533478 AGCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGCATGTTGGAGCGCTGCGCCTCAGGC 533537 Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG 69219 | || || || || || || || || | || || || ||| | ||||| ||| Sbjct 533538 ACCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGGTTCTTGACGATGACTTTGGTGACG 533597 Query 69220 TCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA---TAACAAACATATTCAGTGCTACA 69276 || || || || || || | || | || |||| || || || || Sbjct 533598 GCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCGGGGGTGACGTACATGTTGAGCGCCACG 533657 Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336 || ||||| || || || || ||||| | | | |||| | ||||| || || Sbjct 533658 GAGGCTAGGTTGCACACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCAC 533717 Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396 || || || || ||||| || ||||| || ||||| || ||||| || || || ||| Sbjct 533718 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCC 533777 Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACG 69456 ||||| || || |||| || || || || ||||||| ||||| || | | ||| || Sbjct 533778 TTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACACC 533837 Query 69457 ACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATAT--TGTGTATATAGCC 69514 | || || | || |||| || ||| || ||||| |||||| | |||| Sbjct 533838 TGCTGGGCTTTCACCACCCGCTTGACCCGGCCCTCCTTCTCATAGCGTGTGTACAAAGCC 533897 Query 69515 GTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATG 69574 || || ||||| ||||| || |||| ||||| || |||||||||||||| | | Sbjct 533898 --TCAAACTCATCACCCCAGCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCG 533955 Query 69575 ACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAA 69634 |||| | | | || || | ||||| || ||||| || ||||| ||| | | | Sbjct 533956 ACCAGTCCTGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGA 534015 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | || || | || | | || || || ||||| || || || || || || || || | Sbjct 534016 ACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGA 534075 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTC 69754 || ||| | ||||| || || || || || || | | | || || || || || |||| Sbjct 534076 AGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCTC 534135 Query 69755 CCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAG 69814 |||| || | ||| | || ||||| || ||||| | |||||| || | | || || | Sbjct 534136 CCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTGG 534195 Query 69815 ATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGAC 69874 | || ||||| || || | || || || || | | || || || | | | | Sbjct 534196 AGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGGAACGGATGCAGCTGACCGCCACGC 534255 Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCT 69934 | || || |||||| ||| ||||| || ||||| | || | ||||| || || || | Sbjct 534256 CGATGCCACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGATGCCAT 534315 Query 69935 CTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTC 69994 | ||||| || || ||||| || || || ||||| |||| || | | | || | Sbjct 534316 CGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTTGGTGC 534375 Query 69995 CCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATG 70054 | || || || | || || || ||||| ||||||||| | || |||||||| ||||| | Sbjct 534376 CAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCAGGTTGTACG 534435 Query 70055 TTTCAATAGCTG-ATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATA 70113 | ||||| || | || | | | | | || || || | ||| || ||||||| ||| Sbjct 534436 TCTCAATGGCGGCATCCACGCGCGCGCCG-TGGATGCCCACCGCCACCCGCATCAGCATG 534494 Query 70114 TGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTT 70173 ||||| || || ||| || || || || || | ||| || || ||||| || Sbjct 534495 TGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTTGAGCAGATAGGAGCGCTCCAGGGTC 534554 Query 70174 TTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTA 70233 || || ||||| | ||||| || ||||| | ||||| || || | || || || Sbjct 534555 TTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTCGTAGATGATGGCCGAGTTCAGGCGG 534614 Query 70234 TCCTTATATTTGGTAACTATATCCA---TAACAGTAGGTGAGATAATCGGAGATCGTTTA 70290 ||||| | | || || |||| | | | ||||| || || || | Sbjct 534615 TCCTTGTGCTCCAGGACAATGTCCAGCGTCTCCTT---GGAGATCATAGGCGAATGACGG 534671 Query 70291 CCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGttttttt 70350 | ||| || || || |||||||| | || ||||| ||||| || || | || || Sbjct 534672 CGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCCATGACATCGCTGAACACCTTCTTG 534731 Query 70351 GTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGT 70410 || |||||||| | || || | || || | ||||| | || |||||||| || || Sbjct 534732 GTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCTGCCAAGATGGCATAGTCGGGGTGC 534791 Query 70411 TGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACT 70470 | || || || || || || || || || | |||||| | || | || || || Sbjct 534792 TTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGCGTATCCAGCTCCACCGTGGTCACA 534851 Query 70471 CCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTATGAATTCTGTG 70530 || | || || || || || || ||||||| || | || || | ||| || | | Sbjct 534852 CCACTGTACAGGCCCTGGATCACCTTCATGGTGATCTGAGCCGGGTCCACGAAGTCCGGG 534911 Query 70531 TTCAGACCATAACATAATTTTCTAATACGAGATGTAATTTTATCAAACATAAC 70583 || || ||||| || | || || || || || |||||||| ||||| || Sbjct 534912 TTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTGATTTTATCGAACATGAC 534964 >seq28210 Length=470 Score = 113 bits (124), Expect = 6e-20 Identities = 244/359 (68%), Gaps = 7/359 (2%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| || ||||| ||||| || | || ||| |||||||||| ||||| || ||| Sbjct 450 ATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCAT 391 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC-TGAACAAAATCTTT 39995 || ||||| || || ||| | | ||||| | | ||| ||||| | ||||||| | | Sbjct 390 GATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCATTTACAAAAT-TCT 332 Query 39996 CCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAA 40055 | ||||||||||| ||||| || |||||| || || ||||| ||||| | ||| || | Sbjct 331 CAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTA 272 Query 40056 TAAAATA---TTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATAT 40112 | ||||| || ||||| | | ||||| || | ||||| || | Sbjct 271 TGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGT 212 Query 40113 CTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCAC 40172 ||| ||||| || |||||||| | ||||| ||||| ||| | ||| | ||| Sbjct 211 CTATCTCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCACTCCCACAAATCGT 152 Query 40173 GATATTGTATTGGAAAAATAACAAATCTAT-TTGGATTTTTTGCAAGGATGGGTTCCAT 40230 | | ||| || |||||||| || |||| | || | ||| |||||| || || ||||| Sbjct 151 GGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTTGCAA-AATAGGCTCCAT 94 >seq354 Length=3526367 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||||||||| || | |||||| || ||||| ||||| ||||| || | || | ||| Sbjct 777054 TGAAATTCCCCCGAGAGCACTCTGCGGGTGTAGATATTGCTGGTGTAGGCCTCGATAGAC 777113 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| || || || |||||||| || || || ||||| || |||| | ||||| Sbjct 777114 TCATTATTCCCGAGGATCTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAAGAGCAAACTG 777173 Query 68839 TTTCTAA 68845 ||||||| Sbjct 777174 TTTCTAA 777180 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| || || | ||| || ||||||| ||||| || || ||||| || ||||| Sbjct 778871 ATCTCGGTGCACAAATTGCTGGATTTGATGGTCCCGAGGTTCTGCTGGTTGCTCTTCCCA 778930 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || || ||||||||||| || || ||||||| || |||||| |||| || ||||| || Sbjct 778931 TTGCAAGCGTCCTTGTACAGCATGTACGGAGTGCCCGTTTCAGTCTGGGACTCGATGAT 778989 >seq1486 Length=661795 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| || || | ||||| || || |||||||| ||||| || || || || | Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || ||||| || || || || || ||||||||||| || || || || || | Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 352474 Query 39759 CAAC 39762 | || Sbjct 352473 CCAC 352470 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| || || | ||||| || || |||||||| ||||| || || || || | Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || ||||| || || || || || ||||||||||| || || || || || | Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 357418 Query 39759 CAAC 39762 | || Sbjct 357419 CCAC 357422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686587867622280