Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 280 2e-70
seq28210 113 6e-20
seq354 98.7 1e-15
seq1486 84.2 3e-11
>seq1148
Length=2189075
Score = 280 bits (310), Expect = 2e-70
Identities = 1214/1913 (63%), Gaps = 15/1913 (1%)
Strand=Plus/Plus
Query 68680 CTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACT 68739
||||| || | | | | || || ||||| || || || || || || || | |||
Sbjct 533058 CTCTCAGTGAGATCCTTCAGTAGGTGCGGGTTGACGCACTGGAACTCGCCGGAGAGCACC 533117
Query 68740 CTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGA 68799
|| || ||||| || || ||||| || | || | || || || || || || || ||
Sbjct 533118 CTGCGTGTGTATATGTTGCTGGTGTACGCCTCAATGGACTCGTTGTTGCCAAGGATCTGC 533177
Query 68800 GCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATG 68859
||||| || || || ||||| || |||| || | || ||||| | ||| || | |
Sbjct 533178 GCAGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCTGTTTCTCACACCGTGCTTGGCG 533237
Query 68860 ATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCG 68919
|| || || || || | |||| ||||| || | || | | ||| | ||
Sbjct 533238 ATCTTCTCCTTGAGTAATGTCCAGTCCCACAGCGGCGTGGGAATCCGCTGCCACATGTCA 533297
Query 68920 TATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGT 68979
|| || || || || || || || || || || || || || || || | ||
Sbjct 533298 TACTGGAGGATCCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAGGGGCCGTGCTCA 533357
Query 68980 TCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 69039
| || || || || || ||||| | || |||| || | || ||||| |||| ||
Sbjct 533358 GCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAGTAGAGAGTCTCGAAGATCTGAATA 533417
Query 69040 TTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCC 69099
||||| ||| || || | || || || || | | | ||||| || || || |||
Sbjct 533418 TTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCTGCCGCATGAGAATGAAGGCGTCGGCC 533477
Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159
| ||||| || || || || || || | || | | | || || | | || || ||
Sbjct 533478 AGCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGCATGTTGGAGCGCTGCGCCTCAGGC 533537
Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG 69219
| || || || || || || || || | || || || ||| | ||||| |||
Sbjct 533538 ACCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGGTTCTTGACGATGACTTTGGTGACG 533597
Query 69220 TCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA---TAACAAACATATTCAGTGCTACA 69276
|| || || || || || | || | || |||| || || || ||
Sbjct 533598 GCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCGGGGGTGACGTACATGTTGAGCGCCACG 533657
Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336
|| ||||| || || || || ||||| | | | |||| | ||||| || ||
Sbjct 533658 GAGGCTAGGTTGCACACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCAC 533717
Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396
|| || || || ||||| || ||||| || ||||| || ||||| || || || |||
Sbjct 533718 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCC 533777
Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACG 69456
||||| || || |||| || || || || ||||||| ||||| || | | ||| ||
Sbjct 533778 TTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACACC 533837
Query 69457 ACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATAT--TGTGTATATAGCC 69514
| || || | || |||| || ||| || ||||| |||||| | ||||
Sbjct 533838 TGCTGGGCTTTCACCACCCGCTTGACCCGGCCCTCCTTCTCATAGCGTGTGTACAAAGCC 533897
Query 69515 GTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATG 69574
|| || ||||| ||||| || |||| ||||| || |||||||||||||| | |
Sbjct 533898 --TCAAACTCATCACCCCAGCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCG 533955
Query 69575 ACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAA 69634
|||| | | | || || | ||||| || ||||| || ||||| ||| | | |
Sbjct 533956 ACCAGTCCTGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGA 534015
Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694
| || || | || | | || || || ||||| || || || || || || || || |
Sbjct 534016 ACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGA 534075
Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTC 69754
|| ||| | ||||| || || || || || || | | | || || || || || ||||
Sbjct 534076 AGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCTC 534135
Query 69755 CCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAG 69814
|||| || | ||| | || ||||| || ||||| | |||||| || | | || || |
Sbjct 534136 CCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTGG 534195
Query 69815 ATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGAC 69874
| || ||||| || || | || || || || | | || || || | | | |
Sbjct 534196 AGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGGAACGGATGCAGCTGACCGCCACGC 534255
Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCT 69934
| || || |||||| ||| ||||| || ||||| | || | ||||| || || || |
Sbjct 534256 CGATGCCACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGATGCCAT 534315
Query 69935 CTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTC 69994
| ||||| || || ||||| || || || ||||| |||| || | | | || |
Sbjct 534316 CGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTTGGTGC 534375
Query 69995 CCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATG 70054
| || || || | || || || ||||| ||||||||| | || |||||||| ||||| |
Sbjct 534376 CAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCAGGTTGTACG 534435
Query 70055 TTTCAATAGCTG-ATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATA 70113
| ||||| || | || | | | | | || || || | ||| || ||||||| |||
Sbjct 534436 TCTCAATGGCGGCATCCACGCGCGCGCCG-TGGATGCCCACCGCCACCCGCATCAGCATG 534494
Query 70114 TGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTT 70173
||||| || || ||| || || || || || | ||| || || ||||| ||
Sbjct 534495 TGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTTGAGCAGATAGGAGCGCTCCAGGGTC 534554
Query 70174 TTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTA 70233
|| || ||||| | ||||| || ||||| | ||||| || || | || || ||
Sbjct 534555 TTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTCGTAGATGATGGCCGAGTTCAGGCGG 534614
Query 70234 TCCTTATATTTGGTAACTATATCCA---TAACAGTAGGTGAGATAATCGGAGATCGTTTA 70290
||||| | | || || |||| | | | ||||| || || || |
Sbjct 534615 TCCTTGTGCTCCAGGACAATGTCCAGCGTCTCCTT---GGAGATCATAGGCGAATGACGG 534671
Query 70291 CCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGttttttt 70350
| ||| || || || |||||||| | || ||||| ||||| || || | || ||
Sbjct 534672 CGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCCATGACATCGCTGAACACCTTCTTG 534731
Query 70351 GTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGT 70410
|| |||||||| | || || | || || | ||||| | || |||||||| || ||
Sbjct 534732 GTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCTGCCAAGATGGCATAGTCGGGGTGC 534791
Query 70411 TGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACT 70470
| || || || || || || || || || | |||||| | || | || || ||
Sbjct 534792 TTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGCGTATCCAGCTCCACCGTGGTCACA 534851
Query 70471 CCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTATGAATTCTGTG 70530
|| | || || || || || || ||||||| || | || || | ||| || | |
Sbjct 534852 CCACTGTACAGGCCCTGGATCACCTTCATGGTGATCTGAGCCGGGTCCACGAAGTCCGGG 534911
Query 70531 TTCAGACCATAACATAATTTTCTAATACGAGATGTAATTTTATCAAACATAAC 70583
|| || ||||| || | || || || || || |||||||| ||||| ||
Sbjct 534912 TTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTGATTTTATCGAACATGAC 534964
>seq28210
Length=470
Score = 113 bits (124), Expect = 6e-20
Identities = 244/359 (68%), Gaps = 7/359 (2%)
Strand=Plus/Minus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
||| || ||||| ||||| || | || ||| |||||||||| ||||| || |||
Sbjct 450 ATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCAT 391
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC-TGAACAAAATCTTT 39995
|| ||||| || || ||| | | ||||| | | ||| ||||| | ||||||| | |
Sbjct 390 GATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCATTTACAAAAT-TCT 332
Query 39996 CCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAA 40055
| ||||||||||| ||||| || |||||| || || ||||| ||||| | ||| || |
Sbjct 331 CAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTA 272
Query 40056 TAAAATA---TTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATAT 40112
| ||||| || ||||| | | ||||| || | ||||| || |
Sbjct 271 TGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGT 212
Query 40113 CTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCAC 40172
||| ||||| || |||||||| | ||||| ||||| ||| | ||| | |||
Sbjct 211 CTATCTCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCACTCCCACAAATCGT 152
Query 40173 GATATTGTATTGGAAAAATAACAAATCTAT-TTGGATTTTTTGCAAGGATGGGTTCCAT 40230
| | ||| || |||||||| || |||| | || | ||| |||||| || || |||||
Sbjct 151 GGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTTGCAA-AATAGGCTCCAT 94
>seq354
Length=3526367
Score = 98.7 bits (108), Expect = 1e-15
Identities = 98/127 (77%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
||||||||||| || | |||||| || ||||| ||||| ||||| || | || | |||
Sbjct 777054 TGAAATTCCCCCGAGAGCACTCTGCGGGTGTAGATATTGCTGGTGTAGGCCTCGATAGAC 777113
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
|||||||| || || || |||||||| || || || ||||| || |||| | |||||
Sbjct 777114 TCATTATTCCCGAGGATCTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAAGAGCAAACTG 777173
Query 68839 TTTCTAA 68845
|||||||
Sbjct 777174 TTTCTAA 777180
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384
||||| || || | ||| || ||||||| ||||| || || ||||| || |||||
Sbjct 778871 ATCTCGGTGCACAAATTGCTGGATTTGATGGTCCCGAGGTTCTGCTGGTTGCTCTTCCCA 778930
Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443
|| || ||||||||||| || || ||||||| || |||||| |||| || ||||| ||
Sbjct 778931 TTGCAAGCGTCCTTGTACAGCATGTACGGAGTGCCCGTTTCAGTCTGGGACTCGATGAT 778989
>seq1486
Length=661795
Score = 84.2 bits (92), Expect = 3e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||| ||||| || || | ||||| || || |||||||| ||||| || || || || |
Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||| || ||||| || || || || || ||||||||||| || || || || || |
Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 352474
Query 39759 CAAC 39762
| ||
Sbjct 352473 CCAC 352470
Score = 84.2 bits (92), Expect = 3e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||| ||||| || || | ||||| || || |||||||| ||||| || || || || |
Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||| || ||||| || || || || || ||||||||||| || || || || || |
Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 357418
Query 39759 CAAC 39762
| ||
Sbjct 357419 CCAC 357422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686587867622280
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