Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10769 116 3e-21 seq437 86.0 5e-12 seq597 84.2 2e-11 >seq10769 Length=223 Score = 116 bits (128), Expect = 3e-21 Identities = 149/204 (73%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 44042 TTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGG 44101 ||||| || || |||| | || || || || | || ||||| |||||| | || ||| Sbjct 15 TTTAAGGCCATTGAAAATTTTCCGGCTATCAAGAAGAAGGCAGATTGGGCCTTAAAGTGG 74 Query 44102 ATAAATTCAA-ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCAT 44160 ||| | ||| | | ||||| ||||| || | || ||||||| |||||| ||||| Sbjct 75 ATAGAATCACCAAG----TTTTGCTGAACGCCTGATTGCTTTTGCAGCTGTGGAGGGCAT 130 Query 44161 TTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGG 44220 |||||||||||| | ||| | || || ||||| || ||||| || |||||||| || Sbjct 131 TTTCTTTTCAGGGGCCTTTTGTTCTATTTTCTGGTTGAAAAAACGTGGATTGATGCCCGG 190 Query 44221 GTTGACGTTTTCAAATGAGTTAAT 44244 ||||| |||||||| ||||| || Sbjct 191 ATTGACCTTTTCAAACGAGTTGAT 214 >seq437 Length=1739478 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 87329 CTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCAA 87388 ||||||||||||| | |||||| |||| || || || || ||| | |||| || |||| Sbjct 905340 CTGCTCCCAGTTTGGTGAAATCTCTCTTGGACTGGAAGGTGTAGGCGGTCAGTCCGGCAA 905399 Query 87389 ACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 |||| ||||| || | || | | ||| || | |||||| ||||| |||||||||| Sbjct 905400 ACACGGCACAGGTCAGGAACAAGGCTTGGAGCACGGTGGAATATTCGTAGAAGGTCA 905456 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 87329 CTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCAA 87388 ||||||||||||| | |||||| |||| || || || || ||| | |||| || |||| Sbjct 914189 CTGCTCCCAGTTTGGTGAAATCTCTCTTGGACTGGAAGGTGTAGGCGGTCAGTCCGGCAA 914248 Query 87389 ACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 |||| ||||| || | || | | ||| || | |||||| ||||| |||||||||| Sbjct 914249 ACACGGCACAGGTCAGGAACAAGGCTTGGAGCACGGTGGAATATTCGTAGAAGGTCA 914305 >seq597 Length=1398264 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/103 (80%), Gaps = 6/103 (6%) Strand=Plus/Minus Query 77426 TTAGTCAC--ACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGAT-- 77481 || ||||| ||| ||||||||||| ||||||| |||||||| | |||||||||||| Sbjct 621180 TTGGTCACCGACCGTTGATGGTGAATTTGCTGTCCGTGTAGACCAGCAGCTTCTTGATGT 621121 Query 77482 TTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524 |||||||| | ||||||||||| || || | || |||||| Sbjct 621120 TTTGTTCT--TTCGCTTGTTGCAGCGCCATGCACGCCGCCTGG 621080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397274945998885