Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq10769 116 3e-21
seq437 86.0 5e-12
seq597 84.2 2e-11
>seq10769
Length=223
Score = 116 bits (128), Expect = 3e-21
Identities = 149/204 (73%), Gaps = 5/204 (2%)
Strand=Plus/Plus
Query 44042 TTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGG 44101
||||| || || |||| | || || || || | || ||||| |||||| | || |||
Sbjct 15 TTTAAGGCCATTGAAAATTTTCCGGCTATCAAGAAGAAGGCAGATTGGGCCTTAAAGTGG 74
Query 44102 ATAAATTCAA-ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCAT 44160
||| | ||| | | ||||| ||||| || | || ||||||| |||||| |||||
Sbjct 75 ATAGAATCACCAAG----TTTTGCTGAACGCCTGATTGCTTTTGCAGCTGTGGAGGGCAT 130
Query 44161 TTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGG 44220
|||||||||||| | ||| | || || ||||| || ||||| || |||||||| ||
Sbjct 131 TTTCTTTTCAGGGGCCTTTTGTTCTATTTTCTGGTTGAAAAAACGTGGATTGATGCCCGG 190
Query 44221 GTTGACGTTTTCAAATGAGTTAAT 44244
||||| |||||||| ||||| ||
Sbjct 191 ATTGACCTTTTCAAACGAGTTGAT 214
>seq437
Length=1739478
Score = 86.0 bits (94), Expect = 5e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 87329 CTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCAA 87388
||||||||||||| | |||||| |||| || || || || ||| | |||| || ||||
Sbjct 905340 CTGCTCCCAGTTTGGTGAAATCTCTCTTGGACTGGAAGGTGTAGGCGGTCAGTCCGGCAA 905399
Query 87389 ACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445
|||| ||||| || | || | | ||| || | |||||| ||||| ||||||||||
Sbjct 905400 ACACGGCACAGGTCAGGAACAAGGCTTGGAGCACGGTGGAATATTCGTAGAAGGTCA 905456
Score = 86.0 bits (94), Expect = 5e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 87329 CTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCAA 87388
||||||||||||| | |||||| |||| || || || || ||| | |||| || ||||
Sbjct 914189 CTGCTCCCAGTTTGGTGAAATCTCTCTTGGACTGGAAGGTGTAGGCGGTCAGTCCGGCAA 914248
Query 87389 ACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445
|||| ||||| || | || | | ||| || | |||||| ||||| ||||||||||
Sbjct 914249 ACACGGCACAGGTCAGGAACAAGGCTTGGAGCACGGTGGAATATTCGTAGAAGGTCA 914305
>seq597
Length=1398264
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/103 (80%), Gaps = 6/103 (6%)
Strand=Plus/Minus
Query 77426 TTAGTCAC--ACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGAT-- 77481
|| ||||| ||| ||||||||||| ||||||| |||||||| | ||||||||||||
Sbjct 621180 TTGGTCACCGACCGTTGATGGTGAATTTGCTGTCCGTGTAGACCAGCAGCTTCTTGATGT 621121
Query 77482 TTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524
|||||||| | ||||||||||| || || | || ||||||
Sbjct 621120 TTTGTTCT--TTCGCTTGTTGCAGCGCCATGCACGCCGCCTGG 621080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397274945998885
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |