Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 93.3 4e-14
seq1473 89.7 4e-13
>seq1148
Length=2189075
Score = 93.3 bits (102), Expect = 4e-14
Identities = 308/471 (65%), Gaps = 11/471 (2%)
Strand=Plus/Plus
Query 131615 GGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACC 131674
|||||||| |||||||| | ||| || || | |||||| |||| ||| || | |
Sbjct 533943 GGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATC 534002
Query 131675 CATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAA 131734
|| | || | ||||| || | || | ||| ||| | || | | || ||||
Sbjct 534003 CAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTGTTCTTCTTCAGC 534062
Query 131735 TTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTG 131794
| | ||||| || ||||| ||||| || |||| |||| || | |||||
Sbjct 534063 TCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGC 534122
Query 131795 CGCTTACCGCCT---TGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGC 131851
||||| |||| || | || | || || |||||||||| || |||| |||||||
Sbjct 534123 CGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGC 534182
Query 131852 TCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTG 131911
||| ||||||| ||| |||||||||| |||||||||||| ||| | ||| |
Sbjct 534183 ACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGGAACGGATGCAG 534242
Query 131912 -TGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAG 131969
||| || | || || || || |||| |||| ||||| || || || | | || |
Sbjct 534243 CTGACCG-CCACGCCGATGCCACCTGCCG-ATTTGGAGATGAGGGCACACTGCTTGAGCG 534300
Query 131970 TGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACT 132029
||| ||||| || || | |||||| | ||| | | | ||||| ||||||||
Sbjct 534301 TGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACT 534360
Query 132030 GTTGGTGAAATGTGCCGGC--TGAAAACAATGTGGGGCTGGCGTGTGTAAA 132078
|| | | ||||| || |||||| | ||||| |||||| || ||
Sbjct 534361 GTGGCCGGTTGGTGCCAGCGTTGAAAAGA--GTGGGTGAGGCGTGCGTGAA 534409
>seq1473
Length=2736273
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| || | ||| |||| || | ||| | |||| || ||||| || ||||||||
Sbjct 1454742 TGCCACCTCTCAAACGCAGGACAAGATGAAGAGTAGCTTCCTTTTGGATGTTGTAGTCAG 1454683
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| | |||| || | | |||||||| || || | || || | ||| |||| ||||
Sbjct 1454682 AGAGGGTGCGATCACATCCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGGCG 1454623
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||| || || || ||| ||| ||| | | || ||||| || || | || |
Sbjct 1454622 GAATACCTTCCTTGTCTTTGATTTTGGCTTTGACATTCTCAACAGTATCACTGCCCTCGA 1454563
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| || ||||| || | ||||| || || |||||||||||||| |||||
Sbjct 1454562 CCTCAAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 1454514
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| || | ||| | || || ||||| || || |||||||| | | |||| |
Sbjct 1452448 CGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 1452389
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| | |||||| || || | || | | || ||||| || || | ||| || ||
Sbjct 1452388 TCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCCTTG 1452329
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||| ||| ||| | | || |||||||| || ||||||| || || || ||
Sbjct 1452328 TCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTGATG 1452269
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| ||||| || || || |||||||||||||||||
Sbjct 1452268 GTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCAT 1452234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424740828703224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |