Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1148 93.3 4e-14 seq1473 89.7 4e-13 >seq1148 Length=2189075 Score = 93.3 bits (102), Expect = 4e-14 Identities = 308/471 (65%), Gaps = 11/471 (2%) Strand=Plus/Plus Query 131615 GGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACC 131674 |||||||| |||||||| | ||| || || | |||||| |||| ||| || | | Sbjct 533943 GGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATC 534002 Query 131675 CATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAA 131734 || | || | ||||| || | || | ||| ||| | || | | || |||| Sbjct 534003 CAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTGTTCTTCTTCAGC 534062 Query 131735 TTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTG 131794 | | ||||| || ||||| ||||| || |||| |||| || | ||||| Sbjct 534063 TCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGC 534122 Query 131795 CGCTTACCGCCT---TGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGC 131851 ||||| |||| || | || | || || |||||||||| || |||| ||||||| Sbjct 534123 CGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGC 534182 Query 131852 TCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTG 131911 ||| ||||||| ||| |||||||||| |||||||||||| ||| | ||| | Sbjct 534183 ACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGGAACGGATGCAG 534242 Query 131912 -TGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAG 131969 ||| || | || || || || |||| |||| ||||| || || || | | || | Sbjct 534243 CTGACCG-CCACGCCGATGCCACCTGCCG-ATTTGGAGATGAGGGCACACTGCTTGAGCG 534300 Query 131970 TGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACT 132029 ||| ||||| || || | |||||| | ||| | | | ||||| |||||||| Sbjct 534301 TGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACT 534360 Query 132030 GTTGGTGAAATGTGCCGGC--TGAAAACAATGTGGGGCTGGCGTGTGTAAA 132078 || | | ||||| || |||||| | ||||| |||||| || || Sbjct 534361 GTGGCCGGTTGGTGCCAGCGTTGAAAAGA--GTGGGTGAGGCGTGCGTGAA 534409 >seq1473 Length=2736273 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| |||| || | ||| | |||| || ||||| || |||||||| Sbjct 1454742 TGCCACCTCTCAAACGCAGGACAAGATGAAGAGTAGCTTCCTTTTGGATGTTGTAGTCAG 1454683 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| || | | |||||||| || || | || || | ||| |||| |||| Sbjct 1454682 AGAGGGTGCGATCACATCCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGGCG 1454623 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| || || || ||| ||| ||| | | || ||||| || || | || | Sbjct 1454622 GAATACCTTCCTTGTCTTTGATTTTGGCTTTGACATTCTCAACAGTATCACTGCCCTCGA 1454563 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||| || || |||||||||||||| ||||| Sbjct 1454562 CCTCAAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 1454514 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||| | || || ||||| || || |||||||| | | |||| | Sbjct 1452448 CGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 1452389 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | |||||| || || | || | | || ||||| || || | ||| || || Sbjct 1452388 TCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCCTTG 1452329 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| ||| | | || |||||||| || ||||||| || || || || Sbjct 1452328 TCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTGATG 1452269 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || || ||||||||||||||||| Sbjct 1452268 GTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCAT 1452234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424740828703224