Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1148 132 6e-26 seq1247 84.2 3e-11 >seq1148 Length=2189075 Score = 132 bits (146), Expect = 6e-26 Identities = 551/857 (64%), Gaps = 43/857 (5%) Strand=Plus/Plus Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 ||||| || ||| ||| |||| ||||| || | || || || || | |||| Sbjct 533667 TTGCACACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTG 533726 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 | ||| || || |||| |||| ||||| ||||| ||||| ||||||||||||||| Sbjct 533727 CACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGC 533786 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCT 111430 ||||| ||||| |||||||| ||||| || | || || || | ||| || | |||| Sbjct 533787 ATGTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACACCTGCTGGGCT 533846 Query 111431 GGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCC 111490 || | ||| |||| |||||| ||| || |||||| | || |||||||| Sbjct 533847 TTCACCACCCGCTTGACCCGGCCCTCCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCA 533906 Query 111491 TCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACC 111549 |||||| | || ||| || || || || | |||||| | || ||||| | || Sbjct 533907 TCACCC-CAGCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCGACCA--GTCC 533963 Query 111550 ACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 111607 || ||| |||| ||||||||| || ||||| ||||| || | || || || Sbjct 533964 TGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAACAGGTCA 534023 Query 111608 CTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATC 111666 | || ||| || | ||| ||| || | | ||| ||||| || | ||| || Sbjct 534024 CGGGCGCGCTGCTCCTCTTTGCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAAGATGTC 534082 Query 111667 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTT 111719 |||||| ||||| || || | |||| | || ||| | | | ||| | Sbjct 534083 AAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCTCCC----T 534138 Query 111720 GATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATT 111779 | | || |||||||| ||| ||| | || || ||||| || | | || | || | Sbjct 534139 GGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTGGAGT 534198 Query 111780 GACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA---CATC--ATGGATGTG--- 111831 ||||| || || | ||| || ||| || | | ||| | || Sbjct 534199 TGCCATTGGTGCC-------GGCGATGTA---GCTGCCAGTGGAACGGATGCAGCTGACC 534248 Query 111832 --CATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAG 111889 || || || || || ||| | || ||||| | ||||||| | | || || | ||| Sbjct 534249 GCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAG 534308 Query 111890 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC-- 111947 || || | ||| ||| ||||| |||| | |||||||| ||||||| ||| || | Sbjct 534309 ATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGG 534368 Query 111948 TTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCT 112007 |||||| ||||| ||||| || || |||| ||||| ||||| | | || | | Sbjct 534369 TTGGTG--CCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCA 534426 Query 112008 TGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCA 112067 || ||| ||||| | | | | ||| | | | ||||||||||| | || ||||||| Sbjct 534427 GGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTGGATGCCCACCGCCACCCGCA 534486 Query 112068 TGAACATGTACTGTGGG 112084 | | ||||| ||| ||| Sbjct 534487 TCAGCATGTGCTGCGGG 534503 >seq1247 Length=1231281 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 |||| || ||| || || || || ||| || || || |||||||| || | |||| Sbjct 216350 CCTCGTCCCGGCTGATGAGCTCGTTGGAGTAGGTGAGGCCGGGCATGAGGCCTCTTTTCT 216409 Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 122797 ||||||| || || ||| ||| || |||||||||||||| |||||||| ||||| | Sbjct 216410 TCAACCAGTAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACCGCTGCAAAAG 216469 Query 122798 CAAAAAGGCGTTCGGC 122813 | | ||| || ||||| Sbjct 216470 CCACAAGTCGCTCGGC 216485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627738575599200