Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1148 214 2e-50 >seq1148 Length=2189075 Score = 214 bits (236), Expect = 2e-50 Identities = 838/1300 (64%), Gaps = 32/1300 (2%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || ||| | ||||| | ||||| | |||| ||||| || | ||| || || |||||| Sbjct 533127 TATATGTTGCTGGTGTACGCCTCAATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAG 533186 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || ||||||||||| |||| || |||||||| | | ||| | | || ||| Sbjct 533187 GCGGTGGGCATGGGCGCCAGCAGCAGGCTGTTTCTCACACCGTGCTTGGCGATCTTCTCC 533246 Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAG 118360 ||||| | |||| |||| | || | | || ||||||||| ||| ||||||| Sbjct 533247 TTGAGTAATGTCC-AGTCCCACAGCGGCGTGGGAATCCGCTGCCACATGTCATACTGGAG 533305 Query 118361 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 118420 ||| || | | | || || ||| | ||||| || ||||| | | | |||| Sbjct 533306 GATCCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAG 533365 Query 118421 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGC 118480 ||| |||| ||||| || || |||| || | || || || || || ||| | | Sbjct 533366 CTCGCAGCTGGCCTCCAGCGCGGCGTAGTAGAGAGTCTCGAAGATCTGAATATTGAGTAG 533425 Query 118481 CTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTG 118540 | |||||| | ||||| | | || | ||| || | || || || || || Sbjct 533426 TTGCGCCTCGGGGCTCTCAAAGGGCTGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTG 533485 Query 118541 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGG 118597 ||| |||| |||||| || || || | ||| || || | | || ||| ||| || Sbjct 533486 GACGCCGATGCCAATGGGCCGGTGGCGCATGTTGGAGCGCTGCGC---CTCAGGCACCGG 533542 Query 118598 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 118657 || | || | ||||| | ||| || || || ||| || || || |||| | Sbjct 533543 GTAGTAGTTGATGTCGATGATCCTGTTGAGGTTCTTGACGATGACTTTGGTGACGGCCGC 533602 Query 118658 AAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 118717 ||||| | | | || | |||| ||| |||| ||| | || || | || Sbjct 533603 CAGCTTCTTGAAGTCGTATGTGCG---CTCGGGGGTGACGTACATGTTGAGCGCCACGGA 533659 Query 118718 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAA 118777 || || || ||||| | ||| |||| ||||| || | || |||||||||| Sbjct 533660 GGCTAGGTTGCACACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAG 533719 Query 118778 GTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 118837 ||| | ||| |||||||||| ||||| || || ||| || || |||||||| Sbjct 533720 GTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCCTT 533779 Query 118838 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATC 118897 ||| |||||||| ||||| |||||||| || || |||| || || || | ||| || | Sbjct 533780 GTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACACCTG 533839 Query 118898 GGCAGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTT 118956 ||| || || || ||| | || ||||| | ||| || |||||| | || | Sbjct 533840 CTGGGCTTTCACCACCCGC-TTGACCCGGCCCTCCTTCTCATAGCGTGTGTACAAAGCCT 533898 Query 118957 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 119016 ||||||| |||||| | ||| || || || || || ||| || | ||| |||| Sbjct 533899 CAAACTCATCACCCCAGCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCGACC 533958 Query 119017 ATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 119074 | | || | ||| |||| ||||||||| || |||||||||||||| | |||| Sbjct 533959 A--GTCCTGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAA 534016 Query 119075 GAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 119133 || || || ||| ||| || | || || || || ||||| ||||| | Sbjct 534017 CAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTG-TTCTTCTTCAGCTCCAGGAAGTCGA 534075 Query 119134 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA------TTGACCCCTTACGACGAC 119187 ||| || ||||||||| |||||||||| |||| | || ||| | | | Sbjct 534076 AGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTT--GTTG-C 534132 Query 119188 CAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCAT 119247 | |||||| || || | ||| ||| ||| | ||||| ||||| || | | || | Sbjct 534133 CTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGT 534192 Query 119248 CGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTG 119305 ||| | |||||| || || ||| || | | | ||| | || | || Sbjct 534193 TGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCC--AGTGGAACGGATGCAGCTGACCGC 534250 Query 119306 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 119365 || || || || |||||| | || ||||| | || |||| | |||| || ||||||| Sbjct 534251 CACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGAT 534310 Query 119366 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGG 119425 |||||||| ||| |||| | || | ||||||||||| |||| || |||| | Sbjct 534311 GCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTT 534370 Query 119426 TGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAAC 119465 || ||||||||||| ||||| |||| ||||| ||||| Sbjct 534371 GGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAAC 534410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618146259344120