Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1148 174 2e-38 seq1247 96.9 4e-15 seq1486 84.2 3e-11 >seq1148 Length=2189075 Score = 174 bits (192), Expect = 2e-38 Identities = 944/1496 (63%), Gaps = 50/1496 (3%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| | ||||| ||||| | || || || || | | | ||| | | Sbjct 534503 CCCGCAGCACATGCTGATGCGGGTGGCGGTGGGCATCCACGGCGCGCGCGTGGATGCCGC 534444 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | | ||||| ||| || | | || | | ||||| ||||| |||| || || || Sbjct 534443 CATTGAGACGTACAACCTGCTTTCAGAGAGATGGTTCACGCACGCCTCACCCACTCTTTT 534384 Query 104341 CAATGCTGGTACACCAA--GACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||| ||||| |||||| | || || ||||||| |||||||| | |||| ||||| Sbjct 534383 CAACGCTGG--CACCAACCGGCCACAGTTGTCCAGCTGCTTCCTGCTAGCCATGAAGGAC 534326 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| ||| | || ||||| | || || | | ||||||| | ||||| || | ||| Sbjct 534325 GACAGCATCGATGGCATCTACGACACGCTCAAGCAGTGTGCCCTCATCTCCAAATCGGCA 534266 Query 104459 GGGGGTATTGGGATG-----CACATCCAT--GATG---TGAGAGCCAATAAATCTCGTAT 104508 || || || || || || | ||| | | || ||| || ||| | Sbjct 534265 GGTGGCATCGGCGTGGCGGTCAGCTGCATCCGTTCCACTGGCAGC---TACATCGCC--- 534212 Query 104509 TCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 104568 || || ||||| | || | || | | || ||||| || || | ||| ||| Sbjct 534211 ----GGCACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTGCGTGTCTACAACAACAC 534156 Query 104569 AGCGCGCTATGTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATC 104621 |||||||| || | || ||| | | | ||| || | |||| | || | Sbjct 534155 GGCGCGCTACGTGGACCA----GGGAGGCAACAAGCGGCCCGGCGCCTTCGCCATGTACC 534100 Query 104622 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACG 104681 | ||||| |||||| || ||| | || ||||| ||| || ||| ||| | | Sbjct 534099 TGGAGCCGTGGCACTTTGACATCTTCGACTTCCTGGAGCTGAAGAAGAACACAGGCAAAG 534040 Query 104682 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 104741 ||||| ||| ||| || || |||| || ||||||||| |||||||| |||||||||| Sbjct 534039 AGGAGCAGCGCGCCCGTGACCTGTTCTTCGGTCTCTGGATCCCAGATCTGTTCATGAAGA 533980 Query 104742 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCG 104801 | || ||| | | ||||| ||| | |||||| | || ||||| || || Sbjct 533979 GGGTAGAGAGCAACCAGGACTGGTCGCTCATGTGTCCAAATGAGTGCCCTGGCCTGGACG 533920 Query 104802 A-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCG 104860 | ||| | |||||| |||||||| || | |||||| || ||| | || || |||| Sbjct 533919 AGTGCTG-GGGTGATGAGTTTGAGGCTTTGTACACACGCTATGAGAAGGAGGGCCGGGTC 533861 Query 104861 ACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 104920 | | |||| ||| | |||||| | || || || ||||||| || ||||| Sbjct 533860 AAGCGGGTGGTGAAAGCCCAGCAGGTGTGGTACGCCATCATCGAGTCTCAGACAGAGACG 533801 Query 104921 GGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 104980 || || || |||||||| ||||| || || || || | ||||| || || |||| || Sbjct 533800 GGCACGCCGTACATGCTCTACAAGGATGCATGCAATCGCAAGAGCAACCAGCAGAACCTG 533741 Query 104981 GGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 || |||||| | ||| || || || || ||| | |||| || | | || ||| Sbjct 533740 GGCACCATCAAGTGCAGCAACCTGTGCACGGAGATCGTCGAATACACCAGCCAGGACGAG 533681 Query 105041 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG 105100 ||| ||||| ||||| || || | || ||| || ||| || || ||| Sbjct 533680 GTGGCCGTGTGCAACCTAGCCTCCGTGGCGCTCAACATGTACGTCACCCCCGAG---CGC 533624 Query 105101 ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGA 105160 |||| || | | || || | || || ||| || ||| ||||| ||||| Sbjct 533623 ACATACGACTTCAAGAAGCTGGCGGCCGTCACCAAAGTCATCGTCAAGAACCTCAACAGG 533564 Query 105161 GTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACAC 105217 | || || | || | ||||| || |||| || | || || ||| | ||| Sbjct 533563 ATCATCGACATCAACTACTACCCGGTGCCTGAG---GCGCAGCGCTCCAACATGCGCCAC 533507 Query 105218 CGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA 105277 || || ||||| |||| || ||||| || || || | |||||||| || || | Sbjct 533506 CGGCCCATTGGCATCGGCGTCCAGGGGCTGGCCGACGCCTTCATTCTCATGCGGCAGCCC 533447 Query 105278 TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCC 105337 ||||| | ||| ||| | | ||||| | || || ||||| | || ||||| Sbjct 533446 TTTGAGAGCCCCGAGGCGCAACTACTCAATATTCAGATCTTCGAGACTCTCTACTACGCC 533387 Query 105338 GCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 105397 || || ||||| || | ||| |||| | | | || || || || || | ||| Sbjct 533386 GCGCTGGAGGCCAGCTGCGAGCTGGCCGCTGAGCACGGCCCCTACGAGACGTACCCGGGC 533327 Query 105398 TCTCCAGCTTCA-CAAGGGG-TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTC 105455 ||||| | ||| ||||||| | || || | ||| |||||| | | ||| || | Sbjct 533326 TCTCCTG--TCAGCAAGGGGATCCTCCAGTATGACATGTGGCAGCGGATTCCCACGCCGC 533269 Query 105456 ACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCC 105515 | |||||| | |||||||| ||| || | ||| | | ||||| || | Sbjct 533268 TGTGGGACTGGACATTACTCAAGGAGAAGATCGCCAAGCACGGTGTGAGAAACAGCCTGC 533209 Query 105516 TCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 105575 | |||| || ||||| || |||||||| || || ||| | || || || || | | ||| Sbjct 533208 TGCTGGCGCCCATGCCCACCGCCTCCACTGCGCAGATCCTTGGCAACAACGAGTCCATTG 533149 Query 105576 AACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCA 105635 | | ||||| | ||||| || | || ||| | || ||||| | |||| Sbjct 533148 AGGCGTACACCAGCAACATATACACACGCAGGGTGCTCTCCGGCGAGTTCCAGTGCGTCA 533089 Query 105636 ACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 || ||| || || | || |||| |||| || || ||| | |||| |||||| Sbjct 533088 ACCCGCACCTACTGAAGGATCTCACTGAGAGGGGGCTATGGAGCGAGGACATGAAG 533033 >seq1247 Length=1231281 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94801 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 94860 || |||||||| | || ||||| || ||||| ||||||||||| || |||||| | Sbjct 216485 GCCGAGCGACTTGTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 216426 Query 94861 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 94920 || || || ||| | ||||| |||| |||||||| || ||| || |||||||||||| Sbjct 216425 GCCATCTACTGGTTGAAGAAAAGAGGCCTCATGCCCGGCCTCACCTACTCCAACGAGCTC 216366 Query 94921 ATCTCTCGTGACGAGG 94936 ||| || ||||||| Sbjct 216365 ATCAGCCGGGACGAGG 216350 >seq1486 Length=661795 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||| || |||||| ||| || | ||||| ||||| || || Sbjct 352485 GTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTGAAGAAACGCGGC 352544 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| || ||| ||||||||||||||| ||| | ||||||| Sbjct 352545 CTGATGCCCGGACTCACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 352593 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||| || |||||| ||| || | ||||| ||||| || || Sbjct 357407 GTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTGAAGAAACGCGGC 357348 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| || ||| ||||||||||||||| ||| | ||||||| Sbjct 357347 CTGATGCCCGGACTCACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 357299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582988293263480