Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 174 2e-38
seq1247 96.9 4e-15
seq1486 84.2 3e-11
>seq1148
Length=2189075
Score = 174 bits (192), Expect = 2e-38
Identities = 944/1496 (63%), Gaps = 50/1496 (3%)
Strand=Plus/Minus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
||| ||| ||||| | ||||| ||||| | || || || || | | | ||| | |
Sbjct 534503 CCCGCAGCACATGCTGATGCGGGTGGCGGTGGGCATCCACGGCGCGCGCGTGGATGCCGC 534444
Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340
| | ||||| ||| || | | || | | ||||| ||||| |||| || || ||
Sbjct 534443 CATTGAGACGTACAACCTGCTTTCAGAGAGATGGTTCACGCACGCCTCACCCACTCTTTT 534384
Query 104341 CAATGCTGGTACACCAA--GACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398
||| ||||| |||||| | || || ||||||| |||||||| | |||| |||||
Sbjct 534383 CAACGCTGG--CACCAACCGGCCACAGTTGTCCAGCTGCTTCCTGCTAGCCATGAAGGAC 534326
Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458
||| ||| | || ||||| | || || | | ||||||| | ||||| || | |||
Sbjct 534325 GACAGCATCGATGGCATCTACGACACGCTCAAGCAGTGTGCCCTCATCTCCAAATCGGCA 534266
Query 104459 GGGGGTATTGGGATG-----CACATCCAT--GATG---TGAGAGCCAATAAATCTCGTAT 104508
|| || || || || || | ||| | | || ||| || ||| |
Sbjct 534265 GGTGGCATCGGCGTGGCGGTCAGCTGCATCCGTTCCACTGGCAGC---TACATCGCC--- 534212
Query 104509 TCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 104568
|| || ||||| | || | || | | || ||||| || || | ||| |||
Sbjct 534211 ----GGCACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTGCGTGTCTACAACAACAC 534156
Query 104569 AGCGCGCTATGTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATC 104621
|||||||| || | || ||| | | | ||| || | |||| | || |
Sbjct 534155 GGCGCGCTACGTGGACCA----GGGAGGCAACAAGCGGCCCGGCGCCTTCGCCATGTACC 534100
Query 104622 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACG 104681
| ||||| |||||| || ||| | || ||||| ||| || ||| ||| | |
Sbjct 534099 TGGAGCCGTGGCACTTTGACATCTTCGACTTCCTGGAGCTGAAGAAGAACACAGGCAAAG 534040
Query 104682 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 104741
||||| ||| ||| || || |||| || ||||||||| |||||||| ||||||||||
Sbjct 534039 AGGAGCAGCGCGCCCGTGACCTGTTCTTCGGTCTCTGGATCCCAGATCTGTTCATGAAGA 533980
Query 104742 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCG 104801
| || ||| | | ||||| ||| | |||||| | || ||||| || ||
Sbjct 533979 GGGTAGAGAGCAACCAGGACTGGTCGCTCATGTGTCCAAATGAGTGCCCTGGCCTGGACG 533920
Query 104802 A-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCG 104860
| ||| | |||||| |||||||| || | |||||| || ||| | || || ||||
Sbjct 533919 AGTGCTG-GGGTGATGAGTTTGAGGCTTTGTACACACGCTATGAGAAGGAGGGCCGGGTC 533861
Query 104861 ACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 104920
| | |||| ||| | |||||| | || || || ||||||| || |||||
Sbjct 533860 AAGCGGGTGGTGAAAGCCCAGCAGGTGTGGTACGCCATCATCGAGTCTCAGACAGAGACG 533801
Query 104921 GGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 104980
|| || || |||||||| ||||| || || || || | ||||| || || |||| ||
Sbjct 533800 GGCACGCCGTACATGCTCTACAAGGATGCATGCAATCGCAAGAGCAACCAGCAGAACCTG 533741
Query 104981 GGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040
|| |||||| | ||| || || || || ||| | |||| || | | || |||
Sbjct 533740 GGCACCATCAAGTGCAGCAACCTGTGCACGGAGATCGTCGAATACACCAGCCAGGACGAG 533681
Query 105041 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG 105100
||| ||||| ||||| || || | || ||| || ||| || || |||
Sbjct 533680 GTGGCCGTGTGCAACCTAGCCTCCGTGGCGCTCAACATGTACGTCACCCCCGAG---CGC 533624
Query 105101 ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGA 105160
|||| || | | || || | || || ||| || ||| ||||| |||||
Sbjct 533623 ACATACGACTTCAAGAAGCTGGCGGCCGTCACCAAAGTCATCGTCAAGAACCTCAACAGG 533564
Query 105161 GTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACAC 105217
| || || | || | ||||| || |||| || | || || ||| | |||
Sbjct 533563 ATCATCGACATCAACTACTACCCGGTGCCTGAG---GCGCAGCGCTCCAACATGCGCCAC 533507
Query 105218 CGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA 105277
|| || ||||| |||| || ||||| || || || | |||||||| || || |
Sbjct 533506 CGGCCCATTGGCATCGGCGTCCAGGGGCTGGCCGACGCCTTCATTCTCATGCGGCAGCCC 533447
Query 105278 TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCC 105337
||||| | ||| ||| | | ||||| | || || ||||| | || |||||
Sbjct 533446 TTTGAGAGCCCCGAGGCGCAACTACTCAATATTCAGATCTTCGAGACTCTCTACTACGCC 533387
Query 105338 GCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 105397
|| || ||||| || | ||| |||| | | | || || || || || | |||
Sbjct 533386 GCGCTGGAGGCCAGCTGCGAGCTGGCCGCTGAGCACGGCCCCTACGAGACGTACCCGGGC 533327
Query 105398 TCTCCAGCTTCA-CAAGGGG-TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTC 105455
||||| | ||| ||||||| | || || | ||| |||||| | | ||| || |
Sbjct 533326 TCTCCTG--TCAGCAAGGGGATCCTCCAGTATGACATGTGGCAGCGGATTCCCACGCCGC 533269
Query 105456 ACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCC 105515
| |||||| | |||||||| ||| || | ||| | | ||||| || |
Sbjct 533268 TGTGGGACTGGACATTACTCAAGGAGAAGATCGCCAAGCACGGTGTGAGAAACAGCCTGC 533209
Query 105516 TCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 105575
| |||| || ||||| || |||||||| || || ||| | || || || || | | |||
Sbjct 533208 TGCTGGCGCCCATGCCCACCGCCTCCACTGCGCAGATCCTTGGCAACAACGAGTCCATTG 533149
Query 105576 AACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCA 105635
| | ||||| | ||||| || | || ||| | || ||||| | ||||
Sbjct 533148 AGGCGTACACCAGCAACATATACACACGCAGGGTGCTCTCCGGCGAGTTCCAGTGCGTCA 533089
Query 105636 ACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691
|| ||| || || | || |||| |||| || || ||| | |||| ||||||
Sbjct 533088 ACCCGCACCTACTGAAGGATCTCACTGAGAGGGGGCTATGGAGCGAGGACATGAAG 533033
>seq1247
Length=1231281
Score = 96.9 bits (106), Expect = 4e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 94801 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 94860
|| |||||||| | || ||||| || ||||| ||||||||||| || |||||| |
Sbjct 216485 GCCGAGCGACTTGTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 216426
Query 94861 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 94920
|| || || ||| | ||||| |||| |||||||| || ||| || ||||||||||||
Sbjct 216425 GCCATCTACTGGTTGAAGAAAAGAGGCCTCATGCCCGGCCTCACCTACTCCAACGAGCTC 216366
Query 94921 ATCTCTCGTGACGAGG 94936
||| || |||||||
Sbjct 216365 ATCAGCCGGGACGAGG 216350
>seq1486
Length=661795
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887
|| ||||| ||||||||||| || |||||| ||| || | ||||| ||||| || ||
Sbjct 352485 GTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTGAAGAAACGCGGC 352544
Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936
|| ||||| || ||| ||||||||||||||| ||| | |||||||
Sbjct 352545 CTGATGCCCGGACTCACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 352593
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887
|| ||||| ||||||||||| || |||||| ||| || | ||||| ||||| || ||
Sbjct 357407 GTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTGAAGAAACGCGGC 357348
Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936
|| ||||| || ||| ||||||||||||||| ||| | |||||||
Sbjct 357347 CTGATGCCCGGACTCACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 357299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582988293263480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |