Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq696 86.0 5e-12 >seq696 Length=192186 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 111695 TAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACAAT 111754 ||| ||| | || || || | ||||| || | || || ||||| || || | | Sbjct 54106 TAACCTGCACTTTCAACGGTTCCATGTGGTTGAGGTAGACGTGCGCGTCGCCCAACGTGT 54165 Query 111755 GGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGT 111814 ||| || || | |||| | || |||||||| || |||||||| ||||| || || Sbjct 54166 GGACGAAGTCGCCCGGCTGGAGTCCCGTGATGTGCGCGATCATGTACGTGAGGAGGGCGT 54225 Query 111815 AACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGAC 111874 | || || ||||| || ||||| || ||||||||||| || || | || || ||||| | Sbjct 54226 AGCTGGCGATGTTGAAAGGCACGCCCAGGCCCATATCGCCAGAGCGCTGGTACAGCTGGC 54285 Query 111875 ATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCA 111934 | || || | | |||| || || || || || |||| || ||||||| |||| Sbjct 54286 AGGACAGCTCGCCGTCGCACACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGCGCCA 54345 Query 111935 TC 111936 || Sbjct 54346 TC 54347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391767056163451