Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1148 293 3e-74 seq1553 102 9e-17 seq1486 84.2 2e-11 seq354 82.4 8e-11 >seq1148 Length=2189075 Score = 293 bits (324), Expect = 3e-74 Identities = 486/695 (70%), Gaps = 10/695 (1%) Strand=Plus/Minus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || ||||||||| | || || || ||||||||||| || || | || ||| |||| ||| Sbjct 534409 TTCACGCACGCCTCACCCACTCTTTTCAACGCTGGCACCAACCGGCCACAGTTGTCCAGC 534350 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 ||||||||| | || |||||||| ||| ||||| ||||||||||| ||||||||| || Sbjct 534349 TGCTTCCTGCTAGCCATGAAGGACGACAGCATCGATGGCATCTACGACACGCTCAAGCAG 534290 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA---CTGCTCGAACGTCCGT 53449 ||||||| ||||||||| | | | ||||| ||||| | | ||| | ||||| Sbjct 534289 TGTGCCCTCATCTCCAAATCGGCAGGTGGCATCGGCGTGGCGGTCAGCTGCA---TCCGT 534233 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 | | |||| ||| || || || ||| | || | || | ||||| ||||| Sbjct 534232 TCCACTGGCAGCTACATCGCCGGCACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTG 534173 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 || |||| |||||||||||| || ||||| ||||||| || ||||| || | Sbjct 534172 CGTGTCTACAACAACACGGCGCGCTACGTGGACCAGGGAGGCAACAAGCGGCCCGGCGCC 534113 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 |||||||| ||||| |||||||||||| ||||| | || || || |||||| | Sbjct 534112 TTCGCCATGTACCTGGAGCCGTGGCACTTTGACATCTTCGACTTCCTGGAGCTGAAGAAG 534053 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGAC 53689 || || | || ||| |||| |||||||||||| | ||| ||||| || || Sbjct 534052 AACACAGGCAAAGAGGAGCAGCGCGCCCGTGACCTGTTCTTCGGTCTCTGGATCCCAGAT 533993 Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGC 53749 || |||||| | | ||| |||| || |||| |||| || ||||| || || |||||| Sbjct 533992 CTGTTCATGAAGAGGGTAGAGAGCAACCAGGACTGGTCGCTCATGTGTCCAAATGAGTGC 533933 Query 53750 CCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG-TACGCAG 53807 || ||||| | | ||| || ||||| |||||| | | |||| | ||| || | Sbjct 533932 CCTGGCCTGGACGAGTG-CTGGGGTGATGAGTTTGAGGCTTTGTA-CACACGCTATGAGA 533875 Query 53808 TTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGA 53867 ||||||| |||| | ||| || || | |||| ||| | || ||| || || Sbjct 533874 AGGAGGGCCGGGTCAAGCGGGTGGTGAAAGCCCAGCAGGTGTGGTACGCCATCATCGAGT 533815 Query 53868 GCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCA 53927 ||| |||||||| |||||||||||| |||||||||| | ||| ||||||| Sbjct 533814 CTCAGACAGAGACGGGCACGCCGTACATGCTCTACAAGGATGCATGCAATCGCAAGAGCA 533755 Query 53928 ACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 ||||| ||||| | ||| |||||| | |||||| Sbjct 533754 ACCAGCAGAACCTGGGCACCATCAAGTGCAGCAAC 533720 Score = 86.0 bits (94), Expect = 7e-12 Identities = 90/117 (77%), Gaps = 6/117 (5%) Strand=Plus/Minus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGA---CTGAAGCGGCGCGCAAGTC 55194 |||||| ||| || ||||||||| || ||||||||| |||| ||| |||| || Sbjct 533576 GAACCTCAACAGGATCATCGACATCAACTACTACCCGGTGCCTGAGGCGCAGCGC---TC 533520 Query 55195 CAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCAT 55251 |||| | || ||||||||||| | |||||| || ||||| |||||||| |||||| Sbjct 533519 CAACATGCGCCACCGGCCCATTGGCATCGGCGTCCAGGGGCTGGCCGACGCCTTCAT 533463 >seq1553 Length=952575 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 |||||| || ||||||| ||| |||||||| ||||| ||| | || || || || || Sbjct 30194 AGTGAAGATATAACGAGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTGCCAAACTG 30135 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| |||| || || ||| | |||||| ||||||||||||||||||||||||||| Sbjct 30134 GCCAAGGGGCTGCAGGATGTTGACGTTGTTACTGCCCACAAAGTTTTGAGCCAAGTTGAC 30075 Query 117424 AATCGT 117429 ||| || Sbjct 30074 AATGGT 30069 >seq1486 Length=661795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||||||||| || |||| ||||||||||||||| Sbjct 353305 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCTCCATG 353246 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 353245 AAGTCGAACGGGTTCT 353230 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||||||||| || |||| ||||||||||||||| Sbjct 356584 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCTCCATG 356643 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 356644 AAGTCGAACGGGTTCT 356659 >seq354 Length=3526367 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889 ||| ||||| | |||| ||| | || ||| || || |||| || ||||| || || Sbjct 779017 GGTGAAGGCTCAGCAGGTGTGGTACGCCATCATCGAGTCCCAGACTGAAACGGGCACTCC 778958 Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCAT 53949 ||||||| |||||||| | ||| | ||||||||||||| ||||| |||| ||| Sbjct 778957 GTACATGCTGTACAAGGACGCTTGCAATGGGAAGAGCAACCAGCAGAACCTCGGGACCAT 778898 Query 53950 CAAATCGAGCAACTTATG 53967 |||||| ||||| || || Sbjct 778897 CAAATCCAGCAATTTGTG 778880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546960333844600