Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 293 3e-74
seq1553 102 9e-17
seq1486 84.2 2e-11
seq354 82.4 8e-11
>seq1148
Length=2189075
Score = 293 bits (324), Expect = 3e-74
Identities = 486/695 (70%), Gaps = 10/695 (1%)
Strand=Plus/Minus
Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332
|| ||||||||| | || || || ||||||||||| || || | || ||| |||| |||
Sbjct 534409 TTCACGCACGCCTCACCCACTCTTTTCAACGCTGGCACCAACCGGCCACAGTTGTCCAGC 534350
Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392
||||||||| | || |||||||| ||| ||||| ||||||||||| ||||||||| ||
Sbjct 534349 TGCTTCCTGCTAGCCATGAAGGACGACAGCATCGATGGCATCTACGACACGCTCAAGCAG 534290
Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA---CTGCTCGAACGTCCGT 53449
||||||| ||||||||| | | | ||||| ||||| | | ||| | |||||
Sbjct 534289 TGTGCCCTCATCTCCAAATCGGCAGGTGGCATCGGCGTGGCGGTCAGCTGCA---TCCGT 534233
Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509
| | |||| ||| || || || ||| | || | || | ||||| |||||
Sbjct 534232 TCCACTGGCAGCTACATCGCCGGCACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTG 534173
Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569
|| |||| |||||||||||| || ||||| ||||||| || ||||| || |
Sbjct 534172 CGTGTCTACAACAACACGGCGCGCTACGTGGACCAGGGAGGCAACAAGCGGCCCGGCGCC 534113
Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629
|||||||| ||||| |||||||||||| ||||| | || || || |||||| |
Sbjct 534112 TTCGCCATGTACCTGGAGCCGTGGCACTTTGACATCTTCGACTTCCTGGAGCTGAAGAAG 534053
Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGAC 53689
|| || | || ||| |||| |||||||||||| | ||| ||||| || ||
Sbjct 534052 AACACAGGCAAAGAGGAGCAGCGCGCCCGTGACCTGTTCTTCGGTCTCTGGATCCCAGAT 533993
Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGC 53749
|| |||||| | | ||| |||| || |||| |||| || ||||| || || ||||||
Sbjct 533992 CTGTTCATGAAGAGGGTAGAGAGCAACCAGGACTGGTCGCTCATGTGTCCAAATGAGTGC 533933
Query 53750 CCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG-TACGCAG 53807
|| ||||| | | ||| || ||||| |||||| | | |||| | ||| || |
Sbjct 533932 CCTGGCCTGGACGAGTG-CTGGGGTGATGAGTTTGAGGCTTTGTA-CACACGCTATGAGA 533875
Query 53808 TTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGA 53867
||||||| |||| | ||| || || | |||| ||| | || ||| || ||
Sbjct 533874 AGGAGGGCCGGGTCAAGCGGGTGGTGAAAGCCCAGCAGGTGTGGTACGCCATCATCGAGT 533815
Query 53868 GCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCA 53927
||| |||||||| |||||||||||| |||||||||| | ||| |||||||
Sbjct 533814 CTCAGACAGAGACGGGCACGCCGTACATGCTCTACAAGGATGCATGCAATCGCAAGAGCA 533755
Query 53928 ACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962
||||| ||||| | ||| |||||| | ||||||
Sbjct 533754 ACCAGCAGAACCTGGGCACCATCAAGTGCAGCAAC 533720
Score = 86.0 bits (94), Expect = 7e-12
Identities = 90/117 (77%), Gaps = 6/117 (5%)
Strand=Plus/Minus
Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGA---CTGAAGCGGCGCGCAAGTC 55194
|||||| ||| || ||||||||| || ||||||||| |||| ||| |||| ||
Sbjct 533576 GAACCTCAACAGGATCATCGACATCAACTACTACCCGGTGCCTGAGGCGCAGCGC---TC 533520
Query 55195 CAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCAT 55251
|||| | || ||||||||||| | |||||| || ||||| |||||||| ||||||
Sbjct 533519 CAACATGCGCCACCGGCCCATTGGCATCGGCGTCCAGGGGCTGGCCGACGCCTTCAT 533463
>seq1553
Length=952575
Score = 102 bits (112), Expect = 9e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363
|||||| || ||||||| ||| |||||||| ||||| ||| | || || || || ||
Sbjct 30194 AGTGAAGATATAACGAGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTGCCAAACTG 30135
Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423
||| |||| || || ||| | |||||| |||||||||||||||||||||||||||
Sbjct 30134 GCCAAGGGGCTGCAGGATGTTGACGTTGTTACTGCCCACAAAGTTTTGAGCCAAGTTGAC 30075
Query 117424 AATCGT 117429
||| ||
Sbjct 30074 AATGGT 30069
>seq1486
Length=661795
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || ||||| ||||| || || ||||||||||| || |||| |||||||||||||||
Sbjct 353305 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCTCCATG 353246
Query 74523 CAGTCGAAAGGGTTCT 74538
||||||| |||||||
Sbjct 353245 AAGTCGAACGGGTTCT 353230
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || ||||| ||||| || || ||||||||||| || |||| |||||||||||||||
Sbjct 356584 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCTCCATG 356643
Query 74523 CAGTCGAAAGGGTTCT 74538
||||||| |||||||
Sbjct 356644 AAGTCGAACGGGTTCT 356659
>seq354
Length=3526367
Score = 82.4 bits (90), Expect = 8e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889
||| ||||| | |||| ||| | || ||| || || |||| || ||||| || ||
Sbjct 779017 GGTGAAGGCTCAGCAGGTGTGGTACGCCATCATCGAGTCCCAGACTGAAACGGGCACTCC 778958
Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCAT 53949
||||||| |||||||| | ||| | ||||||||||||| ||||| |||| |||
Sbjct 778957 GTACATGCTGTACAAGGACGCTTGCAATGGGAAGAGCAACCAGCAGAACCTCGGGACCAT 778898
Query 53950 CAAATCGAGCAACTTATG 53967
|||||| ||||| || ||
Sbjct 778897 CAAATCCAGCAATTTGTG 778880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546960333844600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |