Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq847 165 1e-35 seq797 120 4e-22 seq861 89.7 7e-13 >seq847 Length=1458800 Score = 165 bits (182), Expect = 1e-35 Identities = 247/345 (72%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 |||||||| ||||| ||||||||||||| || |||||| |||||||| |||| |||||| Sbjct 1108711 TTCGAGCGTCTCCTCCGGGCCATCTACGCTCCTCAGAACATCTACTGCATCCATGTGGAC 1108652 Query 13800 TCCAAGTCCGGCGACGAGTTCA-TCCGGG--GC-GTCTCGGCCATCGCCAGGTGCTTCCC 13855 ||| | | || || ||| | | || || ||||||||| | ||| |||||||| Sbjct 1108651 CTGAAGGC-GTCGCCG---TCAGTGCTGGCTGCAGTCTCGGCCGTGGCCTCCTGCTTCCC 1108596 Query 13856 TAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCA 13915 || ||| ||||||| ||||| | |||||| |||| | |||| || || || Sbjct 1108595 CAATGTGTTCCTGGCCAGCCGGCGAGAGAGCGTGGTCTACGCCGGCTGGTCCCGGGTCCA 1108536 Query 13916 GGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCT 13975 ||||||||| | ||||||||| || ||| | | | ||| ||||| |||| | | Sbjct 1108535 GGCCGACCTTAACTGCATGTCCGAGCTGCTGGGCACAGGCGTGGCGTGGAAGTACTTCAT 1108476 Query 13976 CAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAA 14035 ||||| || || |||||| || || ||||||||||||||||| ||||||||||| Sbjct 1108475 TAACCTCTGTGGCCAGGACTTTCCCCTTAAGACCAACCTGGAGATGGTGCGGGCGCTTCG 1108416 Query 14036 GGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAA 14080 ||| || ||| ||| ||||||| ||| |||||||| Sbjct 1108415 GGCGCTCAATGGCGCCAACAGCCTGGAGTCGGAGAAGATGCCCAA 1108371 Score = 104 bits (114), Expect = 3e-17 Identities = 295/442 (67%), Gaps = 25/442 (6%) Strand=Plus/Minus Query 14154 AAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACC 14213 |||| |||||||| || | |||||| | | || ||||| ||| ||| ||| || Sbjct 1107906 AAGGAGCCGCCGCCCTTCCAACTGCCCATCCTGTCAGGGAACGCCTACATTGTGGTGACT 1107847 Query 14214 CGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTG-GCCCTG---CTCATGCACTG 14269 |||| ||||| | | || || || | || |||| | | |||| ||||| | || Sbjct 1107846 CGGGGCTTCGTC--CGTAGTGTTCTAG-AGGA-CCGGCGTGTCCTGGCCCTCATAGAGTG 1107791 Query 14270 GTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGG 14329 | | ||||||| | |||||||||||| ||||||||| || || ||| | ||| || Sbjct 1107790 GGCCAAGGACACATTTAGCCCCGACGAGTTCCTGTGGGCGACTGTTCAGCGCATGCCTGG 1107731 Query 14330 GACGCCCGGGGGGATC----CCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCA 14385 |||||| || || | ||| ||||||||| ||| | | ||| Sbjct 1107730 CGTGCCCGGCTCCATGTGGGCCAG--CAC--CAAGTACGATGTGAGCGACGTCTACGCCC 1107675 Query 14386 AGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATA-----TCAAGAAAGGGGCCCT 14440 || || | ||||||||||| | ||||||| || || | | | | || | Sbjct 1107674 TGGCTCGGCTGGTCAAGTGGCAACATCACGAGGGCGAGCGAGCCTCCATACACG--CCGT 1107617 Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGT 14500 ||||||||| ||| ||||||||||||| ||||| ||| | | |||| ||||||| | Sbjct 1107616 GTACCCGCCGTGCAACGGCATCCACGTGAGGGCCATATGCGTGTACGGGGTCGGCGACCT 1107557 Query 14501 GAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACG-AGACGGACG 14559 | ||||| || ||| | |||||| || ||||||||||| ||| ||| | |||||| Sbjct 1107556 GCAGTGGATGCTGAGGCAGCGGCACCTCTTTGCCAACAAGTTTGAC-ACGAACACGGACC 1107498 Query 14560 AGTTCGCCGTGCGCTGTCTGGA 14581 ||||| || || |||||| Sbjct 1107497 CTGTCGCCATGTACTATCTGGA 1107476 >seq797 Length=1598739 Score = 120 bits (132), Expect = 4e-22 Identities = 497/772 (64%), Gaps = 28/772 (4%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 |||||| || ||||||||||| ||||| || ||||||||| | ||||||| |||||| Sbjct 995790 GAAGAGAGGGATTTTCCCATCGCATACTCCATGGTGATCCACGAACAGATCGAAATGTTC 995849 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 ||||| || || | ||||| ||| |||| |||||| |||||||||| ||||||||| Sbjct 995850 GAGCGACTGTTGCGTGCCATTTACACCCCTCAGAACATCTACTGCGTGCACGTGGACCGA 995909 Query 13803 AAGTC--CGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860 || || | |||| | ||| || ||| ||||| | ||||| || | Sbjct 995910 AAATCTACAGCGA--AATTCCATGAGGCCGTGAAAGCCATTGTATCCTGCTTTGAGAATG 995967 Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920 | | | || | | | ||| | || ||| ||| || |||||||| | Sbjct 995968 TATTCATAGCTGGGAAATTAGAAAATGTGATTTATACCTCATGGGCGCGAGTGCAGGCTG 996027 Query 13921 ACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACC 13980 | | | ||||||| | || || || | ||| ||||||||||||||| ||| Sbjct 996028 ATTTGAACTGCATGGAGAGTTTGTTGGCGTCTCATGTCCGGTGGAGGTACCTGCTGAACA 996087 Query 13981 TGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCC 14040 ||||||| ||||| ||| | ||||||||| ||||| |||| || |||| | || Sbjct 996088 CATGCGGGACAGACTTTCCGATTAAGACCAACAGAGAGATGGTGCAAGCTTTGAAAGTCC 996147 Query 14041 TGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA--ACCACAAGCTGCACCGCAT 14098 | || |||||| | |||| | || | || || | | ||||| ||| || | Sbjct 996148 TCAATGGGAAGAACAGCATGGAAACGGAAGCCA--CCAATGATTACAAGACGCAACG--T 996203 Query 14099 CAGGAAGAGGCACGTGGTGGCCAGCGGC---GGCGTGGTGGTCAACACCGGC---AGGAA 14152 | || | ||| || || | | | || |||| |||| | ||||| Sbjct 996204 TGGCAATA-TCAC------TACAACGTCACAGACTCAGTTGTCAGGACCGACGTGAGGAA 996256 Query 14153 CAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCAC 14212 ||| ||| || || | || | |||||| || ||| || || ||||||| | || Sbjct 996257 -AAG--CCCACCTCCCATTAGAAGCCCCATGTTCATGGGGAATGCCTACTTTGTAGCCAG 996313 Query 14213 CCGGGAGTTCGTGGACTTCGTCCTCAAGGA-CGAGCCGGTGGCCCTGCTCATGCACTGGT 14271 | ||| |||||||| ||| | ||| |||| ||| || | || | ||| Sbjct 996314 CAGGGCCTTCGTGGAGCACGTGATGCGGGACCGAG-AGGTTCAGGTGTTGCTGGAGTGGG 996372 Query 14272 TCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGA 14331 ||||||| |||||||| ||||||||| |||||||||| | ||| | ||| | Sbjct 996373 AGAAGGACACCTACAGCCCGGACGAGCACTTGTGGGCCACTTTACAGCGGATGCCCTCCG 996432 Query 14332 CGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCA 14391 |||||| | || | ||||||||| |||||| ||||||||| |||| | | Sbjct 996433 TGCCCGGATCAGTGCCTGCAAACGTCAAGTTCGACACGTCGGACATGCAAGCCATCGCCC 996492 Query 14392 GGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTA 14443 | ||||| ||| ||| | |||||| | | ||||||||| | ||| Sbjct 996493 GCGCGGTCAAATGGAGCTATTTATCAGGGGATGTGAGGAAAGGGGCTCCGTA 996544 >seq861 Length=3009243 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 ||| || |||| ||| | | ||||||| |||| ||| | | ||| ||| |||||| Sbjct 1299321 CGCCTGAAGGCGGACTTGAACTGCATGGCGGATTTGGCCACGTCCGAGGTCGGCTGGAGG 1299380 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 | ||||||| ||||||||| ||||||||||||||||| ||||||||| | ||||| Sbjct 1299381 AAGGTGCTCAATCTGTGCGGGCAGGACTTCCCGCTCAAGAGCAACCTGGAATTGGTGCG 1299439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658431428811520