Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq847 165 1e-35
seq797 120 4e-22
seq861 89.7 7e-13
>seq847
Length=1458800
Score = 165 bits (182), Expect = 1e-35
Identities = 247/345 (72%), Gaps = 8/345 (2%)
Strand=Plus/Minus
Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799
|||||||| ||||| ||||||||||||| || |||||| |||||||| |||| ||||||
Sbjct 1108711 TTCGAGCGTCTCCTCCGGGCCATCTACGCTCCTCAGAACATCTACTGCATCCATGTGGAC 1108652
Query 13800 TCCAAGTCCGGCGACGAGTTCA-TCCGGG--GC-GTCTCGGCCATCGCCAGGTGCTTCCC 13855
||| | | || || ||| | | || || ||||||||| | ||| ||||||||
Sbjct 1108651 CTGAAGGC-GTCGCCG---TCAGTGCTGGCTGCAGTCTCGGCCGTGGCCTCCTGCTTCCC 1108596
Query 13856 TAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCA 13915
|| ||| ||||||| ||||| | |||||| |||| | |||| || || ||
Sbjct 1108595 CAATGTGTTCCTGGCCAGCCGGCGAGAGAGCGTGGTCTACGCCGGCTGGTCCCGGGTCCA 1108536
Query 13916 GGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCT 13975
||||||||| | ||||||||| || ||| | | | ||| ||||| |||| | |
Sbjct 1108535 GGCCGACCTTAACTGCATGTCCGAGCTGCTGGGCACAGGCGTGGCGTGGAAGTACTTCAT 1108476
Query 13976 CAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAA 14035
||||| || || |||||| || || ||||||||||||||||| |||||||||||
Sbjct 1108475 TAACCTCTGTGGCCAGGACTTTCCCCTTAAGACCAACCTGGAGATGGTGCGGGCGCTTCG 1108416
Query 14036 GGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAA 14080
||| || ||| ||| ||||||| ||| ||||||||
Sbjct 1108415 GGCGCTCAATGGCGCCAACAGCCTGGAGTCGGAGAAGATGCCCAA 1108371
Score = 104 bits (114), Expect = 3e-17
Identities = 295/442 (67%), Gaps = 25/442 (6%)
Strand=Plus/Minus
Query 14154 AAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACC 14213
|||| |||||||| || | |||||| | | || ||||| ||| ||| ||| ||
Sbjct 1107906 AAGGAGCCGCCGCCCTTCCAACTGCCCATCCTGTCAGGGAACGCCTACATTGTGGTGACT 1107847
Query 14214 CGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTG-GCCCTG---CTCATGCACTG 14269
|||| ||||| | | || || || | || |||| | | |||| ||||| | ||
Sbjct 1107846 CGGGGCTTCGTC--CGTAGTGTTCTAG-AGGA-CCGGCGTGTCCTGGCCCTCATAGAGTG 1107791
Query 14270 GTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGG 14329
| | ||||||| | |||||||||||| ||||||||| || || ||| | ||| ||
Sbjct 1107790 GGCCAAGGACACATTTAGCCCCGACGAGTTCCTGTGGGCGACTGTTCAGCGCATGCCTGG 1107731
Query 14330 GACGCCCGGGGGGATC----CCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCA 14385
|||||| || || | ||| ||||||||| ||| | | |||
Sbjct 1107730 CGTGCCCGGCTCCATGTGGGCCAG--CAC--CAAGTACGATGTGAGCGACGTCTACGCCC 1107675
Query 14386 AGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATA-----TCAAGAAAGGGGCCCT 14440
|| || | ||||||||||| | ||||||| || || | | | | || |
Sbjct 1107674 TGGCTCGGCTGGTCAAGTGGCAACATCACGAGGGCGAGCGAGCCTCCATACACG--CCGT 1107617
Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGT 14500
||||||||| ||| ||||||||||||| ||||| ||| | | |||| ||||||| |
Sbjct 1107616 GTACCCGCCGTGCAACGGCATCCACGTGAGGGCCATATGCGTGTACGGGGTCGGCGACCT 1107557
Query 14501 GAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACG-AGACGGACG 14559
| ||||| || ||| | |||||| || ||||||||||| ||| ||| | ||||||
Sbjct 1107556 GCAGTGGATGCTGAGGCAGCGGCACCTCTTTGCCAACAAGTTTGAC-ACGAACACGGACC 1107498
Query 14560 AGTTCGCCGTGCGCTGTCTGGA 14581
||||| || || ||||||
Sbjct 1107497 CTGTCGCCATGTACTATCTGGA 1107476
>seq797
Length=1598739
Score = 120 bits (132), Expect = 4e-22
Identities = 497/772 (64%), Gaps = 28/772 (4%)
Strand=Plus/Plus
Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742
|||||| || ||||||||||| ||||| || ||||||||| | ||||||| ||||||
Sbjct 995790 GAAGAGAGGGATTTTCCCATCGCATACTCCATGGTGATCCACGAACAGATCGAAATGTTC 995849
Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802
||||| || || | ||||| ||| |||| |||||| |||||||||| |||||||||
Sbjct 995850 GAGCGACTGTTGCGTGCCATTTACACCCCTCAGAACATCTACTGCGTGCACGTGGACCGA 995909
Query 13803 AAGTC--CGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860
|| || | |||| | ||| || ||| ||||| | ||||| || |
Sbjct 995910 AAATCTACAGCGA--AATTCCATGAGGCCGTGAAAGCCATTGTATCCTGCTTTGAGAATG 995967
Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920
| | | || | | | ||| | || ||| ||| || |||||||| |
Sbjct 995968 TATTCATAGCTGGGAAATTAGAAAATGTGATTTATACCTCATGGGCGCGAGTGCAGGCTG 996027
Query 13921 ACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACC 13980
| | | ||||||| | || || || | ||| ||||||||||||||| |||
Sbjct 996028 ATTTGAACTGCATGGAGAGTTTGTTGGCGTCTCATGTCCGGTGGAGGTACCTGCTGAACA 996087
Query 13981 TGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCC 14040
||||||| ||||| ||| | ||||||||| ||||| |||| || |||| | ||
Sbjct 996088 CATGCGGGACAGACTTTCCGATTAAGACCAACAGAGAGATGGTGCAAGCTTTGAAAGTCC 996147
Query 14041 TGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA--ACCACAAGCTGCACCGCAT 14098
| || |||||| | |||| | || | || || | | ||||| ||| || |
Sbjct 996148 TCAATGGGAAGAACAGCATGGAAACGGAAGCCA--CCAATGATTACAAGACGCAACG--T 996203
Query 14099 CAGGAAGAGGCACGTGGTGGCCAGCGGC---GGCGTGGTGGTCAACACCGGC---AGGAA 14152
| || | ||| || || | | | || |||| |||| | |||||
Sbjct 996204 TGGCAATA-TCAC------TACAACGTCACAGACTCAGTTGTCAGGACCGACGTGAGGAA 996256
Query 14153 CAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCAC 14212
||| ||| || || | || | |||||| || ||| || || ||||||| | ||
Sbjct 996257 -AAG--CCCACCTCCCATTAGAAGCCCCATGTTCATGGGGAATGCCTACTTTGTAGCCAG 996313
Query 14213 CCGGGAGTTCGTGGACTTCGTCCTCAAGGA-CGAGCCGGTGGCCCTGCTCATGCACTGGT 14271
| ||| |||||||| ||| | ||| |||| ||| || | || | |||
Sbjct 996314 CAGGGCCTTCGTGGAGCACGTGATGCGGGACCGAG-AGGTTCAGGTGTTGCTGGAGTGGG 996372
Query 14272 TCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGA 14331
||||||| |||||||| ||||||||| |||||||||| | ||| | ||| |
Sbjct 996373 AGAAGGACACCTACAGCCCGGACGAGCACTTGTGGGCCACTTTACAGCGGATGCCCTCCG 996432
Query 14332 CGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCA 14391
|||||| | || | ||||||||| |||||| ||||||||| |||| | |
Sbjct 996433 TGCCCGGATCAGTGCCTGCAAACGTCAAGTTCGACACGTCGGACATGCAAGCCATCGCCC 996492
Query 14392 GGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTA 14443
| ||||| ||| ||| | |||||| | | ||||||||| | |||
Sbjct 996493 GCGCGGTCAAATGGAGCTATTTATCAGGGGATGTGAGGAAAGGGGCTCCGTA 996544
>seq861
Length=3009243
Score = 89.7 bits (98), Expect = 7e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967
||| || |||| ||| | | ||||||| |||| ||| | | ||| ||| ||||||
Sbjct 1299321 CGCCTGAAGGCGGACTTGAACTGCATGGCGGATTTGGCCACGTCCGAGGTCGGCTGGAGG 1299380
Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026
| ||||||| ||||||||| ||||||||||||||||| ||||||||| | |||||
Sbjct 1299381 AAGGTGCTCAATCTGTGCGGGCAGGACTTCCCGCTCAAGAGCAACCTGGAATTGGTGCG 1299439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658431428811520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |