Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 113 3e-20
>seq1473
Length=2736273
Score = 113 bits (124), Expect = 3e-20
Identities = 166/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| |||| ||||||| || | |||||| ||| ||||| || ||||| || || ||
Sbjct 1454057 GCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 1453998
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || | ||||| |||||||| || |||||||| || | ||||||||| || ||
Sbjct 1453997 GAGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGG 1453938
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT---AAAATTGTGTCTTCGCTCTC 34655
| || |||||||| ||| ||| | || || | || | ||| |||| |||
Sbjct 1453937 AATGCCTTCCTTGTCCTGGAT-TTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCA- 1453880
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| | ||| || || || || || | ||||||||||| |||||||||
Sbjct 1453879 -ACTTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCATG 1453829
Score = 109 bits (120), Expect = 3e-19
Identities = 165/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || ||||||| || | |||||| ||| |||||| || ||||| || |||||
Sbjct 2587729 GCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 2587670
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || | ||||| || || ||||| ||||| || || | ||| ||||| || ||
Sbjct 2587669 GAGCGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGG 2587610
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657
| || |||||||| ||| ||| | ||| || | ||| ||||| | ||| |
Sbjct 2587609 AATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAA 2587551
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
| || | ||| || || || || || | || |||||||| |||||||||||
Sbjct 2587550 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2587499
Score = 109 bits (120), Expect = 3e-19
Identities = 165/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || ||||||| || | |||||| ||| |||||| || ||||| || || ||
Sbjct 2590174 GCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2590233
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || ||||||| || || ||||| ||||| || || | ||| ||||| || ||
Sbjct 2590234 GAGAGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGG 2590293
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657
| || |||||||| ||| ||| | ||| || | ||| ||||| | ||| |
Sbjct 2590294 AATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAA 2590352
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
| || | ||| || || || || || | || |||||||| |||||||||||
Sbjct 2590353 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2590404
Score = 104 bits (114), Expect = 1e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| ||||||| || | |||||| || || || || ||||| ||||| ||
Sbjct 1455196 CCACCTCGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAG 1455137
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||| || | ||||| | |||||| || |||||||| || | |||||| || || ||
Sbjct 1455136 AGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGA 1455077
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| ||| |||||||| ||| ||| | ||| || | || ||||| | ||| ||
Sbjct 1455076 ATTCCTTCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAAC 1455018
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| | || || || ||||| || | || ||||||||||||||||||
Sbjct 1455017 CTCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTGCATG 1454969
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| ||||| | ||||| || ||||| ||| |||||| || ||||| ||||| ||
Sbjct 1454513 GCCACCTCTCAAACGCAGGACATGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 1454454
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| ||| | || ||||| ||| | || ||||||||||| || | ||| ||||| || ||
Sbjct 1454453 GAGGGTTTGGTCATCTTCCAGTGGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGGGG 1454394
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| || ||||||||| ||| || | || || | || ||||| |||| |
Sbjct 1454393 AATGCCTTCCTTGTCTTGGAT-TTGGGCCTTGACATTCTCAACAGTGTCACTAGTCTCGA 1454335
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
| || | ||| | | || ||||| | || |||||||| |||||||||
Sbjct 1454334 CCTCAAGGGTGACGGGCTTGCCGGTAAGGGTCTTCACAAATATCTGCATG 1454285
Score = 91.5 bits (100), Expect = 9e-14
Identities = 162/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGT-GCTCTCCTTTTGAATGTTATAATCTG 34537
||| ||||| | ||||| || | ||| ||||| ||| |||||||| ||||| || || |
Sbjct 1454741 GCCACCTCTCAAACGCAGGACAAGATGAAGAGTAGCT-TCCTTTTGGATGTTGTAGTCAG 1454683
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| || || || || | | || ||||| || ||||| || | | ||| || | ||||
Sbjct 1454682 AGAGGGTGCGATCACATCCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGGCG 1454623
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCC 34656
| | || ||||||||| |||| ||| | ||| || | || || || || |||
Sbjct 1454622 GAATACCTTCCTTGTCTTTGAT-TTTGGCTTTGACATTCTCAACAGTATCACTGCCCTCG 1454564
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || | || || || || || |||| ||||||||||| |||||||||
Sbjct 1454563 ACCTCAAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCATG 1454513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314586230536841
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |