Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1473 113 3e-20 >seq1473 Length=2736273 Score = 113 bits (124), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||||||| || | |||||| ||| ||||| || ||||| || || || Sbjct 1454057 GCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 1453998 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| |||||||| || |||||||| || | ||||||||| || || Sbjct 1453997 GAGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGG 1453938 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT---AAAATTGTGTCTTCGCTCTC 34655 | || |||||||| ||| ||| | || || | || | ||| |||| ||| Sbjct 1453937 AATGCCTTCCTTGTCCTGGAT-TTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCA- 1453880 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| | ||| || || || || || | ||||||||||| ||||||||| Sbjct 1453879 -ACTTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCATG 1453829 Score = 109 bits (120), Expect = 3e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||||| || | |||||| ||| |||||| || ||||| || ||||| Sbjct 2587729 GCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 2587670 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || ||||| ||||| || || | ||| ||||| || || Sbjct 2587669 GAGCGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGG 2587610 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || |||||||| ||| ||| | ||| || | ||| ||||| | ||| | Sbjct 2587609 AATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAA 2587551 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | || | ||| || || || || || | || |||||||| ||||||||||| Sbjct 2587550 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2587499 Score = 109 bits (120), Expect = 3e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||||| || | |||||| ||| |||||| || ||||| || || || Sbjct 2590174 GCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2590233 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || ||||||| || || ||||| ||||| || || | ||| ||||| || || Sbjct 2590234 GAGAGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGG 2590293 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || |||||||| ||| ||| | ||| || | ||| ||||| | ||| | Sbjct 2590294 AATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAA 2590352 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | || | ||| || || || || || | || |||||||| ||||||||||| Sbjct 2590353 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2590404 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||| || | |||||| || || || || ||||| ||||| || Sbjct 1455196 CCACCTCGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAG 1455137 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| | |||||| || |||||||| || | |||||| || || || Sbjct 1455136 AGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGA 1455077 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||| |||||||| ||| ||| | ||| || | || ||||| | ||| || Sbjct 1455076 ATTCCTTCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAAC 1455018 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || || || ||||| || | || |||||||||||||||||| Sbjct 1455017 CTCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTGCATG 1454969 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| | ||||| || ||||| ||| |||||| || ||||| ||||| || Sbjct 1454513 GCCACCTCTCAAACGCAGGACATGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 1454454 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || ||| | || ||||| ||| | || ||||||||||| || | ||| ||||| || || Sbjct 1454453 GAGGGTTTGGTCATCTTCCAGTGGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGGGG 1454394 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || ||||||||| ||| || | || || | || ||||| |||| | Sbjct 1454393 AATGCCTTCCTTGTCTTGGAT-TTGGGCCTTGACATTCTCAACAGTGTCACTAGTCTCGA 1454335 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| | | || ||||| | || |||||||| ||||||||| Sbjct 1454334 CCTCAAGGGTGACGGGCTTGCCGGTAAGGGTCTTCACAAATATCTGCATG 1454285 Score = 91.5 bits (100), Expect = 9e-14 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGT-GCTCTCCTTTTGAATGTTATAATCTG 34537 ||| ||||| | ||||| || | ||| ||||| ||| |||||||| ||||| || || | Sbjct 1454741 GCCACCTCTCAAACGCAGGACAAGATGAAGAGTAGCT-TCCTTTTGGATGTTGTAGTCAG 1454683 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || || | | || ||||| || ||||| || | | ||| || | |||| Sbjct 1454682 AGAGGGTGCGATCACATCCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGGCG 1454623 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCC 34656 | | || ||||||||| |||| ||| | ||| || | || || || || ||| Sbjct 1454622 GAATACCTTCCTTGTCTTTGAT-TTTGGCTTTGACATTCTCAACAGTATCACTGCCCTCG 1454564 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | || || || || || |||| ||||||||||| ||||||||| Sbjct 1454563 ACCTCAAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCATG 1454513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314586230536841